clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF013E10 | Sequence | 251 | 003806 (3) | ref|XP_002532890.1| | 3e-25 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative | 700 | 011248 (2) | ref|XP_009630581.1| | 6e-70 | PREDICTED: protein NSP-INTERACTING KINASE 1 [Nicotiana tomentosiformis] |
JMSF038H20 | Sequence | 614 | 003806 (3) | ref|XP_011099082.1| | 4e-35 | PREDICTED: protein NSP-INTERACTING KINASE 1-like isoform X2 [Sesamum indicum] | 758 | 018288 | ref|XP_009803320.1| | 4e-67 | PREDICTED: protein NSP-INTERACTING KINASE 1-like isoform X1 [Nicotiana sylvestr |
JMSF052E11 | Sequence | 679 | 003806 (3) | ref|XP_011099082.1| | 5e-94 | PREDICTED: protein NSP-INTERACTING KINASE 1-like isoform X2 [Sesamum indicum] | 971 | 017290 | ref|XP_004232118.1| | 1e-154 | PREDICTED: protein NSP-INTERACTING KINASE 1 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMSF052E11+ GGAAA
____________________________________________________________
consensus GGAAA
. : . : . : . : . : . :
JMSF052E11+ CCTTGGCACAGGTCCACTCAAGTTATTGTATGATAAATCCACGAGAGAAAGCTGAGTCAT
____________________________________________________________
consensus CCTTGGCACAGGTCCACTCAAGTTATTGTATGATAAATCCACGAGAGAAAGCTGAGTCAT
. : . : . : . : . : . :
JMSF052E11+ GTTTGTCAGCGACGCTGGGATTTCCCCCCACAGGCTGTTATTGTTGAGCCTCAAGTACTT
____________________________________________________________
consensus GTTTGTCAGCGACGCTGGGATTTCCCCCCACAGGCTGTTATTGTTGAGCCTCAAGTACTT
. : . : . : . : . : . :
JMSF052E11+ GAGGCCTTTCAAATGTCCCAAAGGAGGGATTTCACCAGTGAAGATGTTATTAGAAAGATC
____________________________________________________________
consensus GAGGCCTTTCAAATGTCCCAAAGGAGGGATTTCACCAGTGAAGATGTTATTAGAAAGATC
. : . : . : . : . : . :
JMSF052E11+ GAGTGTGTGAAGATTCGAGAGGCGATTAATCTCTACCGGGATTGGTCCTGTTATGTTGTT
____________________________________________________________
consensus GAGTGTGTGAAGATTCGAGAGGCGATTAATCTCTACCGGGATTGGTCCTGTTATGTTGTT
. : . : . : . : . : . :
JMSF052E11+ GCTCTGCAAGAGTATGATCTGGAGGTTTGTCAAATTCCCAATGCTTGGAGAAAGAGTTCC
____________________________________________________________
consensus GCTCTGCAAGAGTATGATCTGGAGGTTTGTCAAATTCCCAATGCTTGGAGAAAGAGTTCC
. : . : . : . : . : . :
JMSF052E11+ AGACAAATACTGGCTGGGAGTTCCCAGTCCAATAACCAGACTCTCTGCAGAACAAGTGAC
JMSF013E10+ GTGAC
JMSF038H20+ CAGTCCAATAACCAGACTNTCTGCAGAACAAGTGAC
____________________________________________________________
consensus AGACAAATACTGGCTGGGAGTTCCCAGTCCAATAACCAGACTCTCTGCAGAACAAGTGAC
. : . : . : . : . : . :
JMSF052E11+ CATAGTCCAGCTACATGGATCAACAGCATCCCCATCCCAATTATCAAGAACACCATGGGG
JMSF013E10+ CATGGACCAGCTACATGGATCAACAGCATCCCCATCCCAGTTATCAAGAACCCCATGAGG
JMSF038H20+ CATAGTCCAGCTACATGGATCAACAGCATCCCCATCCCAATTATCAAGAACACCATGGGG
____________________________________________________________
consensus CATAGTCCAGCTACATGGATCAACAGCATCCCCATCCCAATTATCAAGAACACCATGGGG
. : . : . : . : . : . :
JMSF052E11+ ATCCTTTAGAGCAGCTTTTATCCCCATTAAAGCTTGCACTTCAAAGTTCACACCTTTGGG
JMSF013E10+ ATCTTTCAGAGAAGCCTTTATGCCCATTAAAGCTTGCACTTCAAAGTTTACACCTTTAGG
JMSF038H20+ ATCCTTTAGAGCAGCTTTTATCCCCATTAAAGCTTGCACTTCAAAGTTCACACCTTTGGG
____________________________________________________________
consensus ATCCTTTAGAGCAGCTTTTATCCCCATTAAAGCTTGCACTTCAAAGTTCACACCTTTGGG
. : . : . : . : . : . :
JMSF052E11+ GGACAGCACACTAACTGCAGAGCCCAAAAAACACAGAAATAGAAATCCCAGAGACCAATA
JMSF013E10+ GGATAGCA
JMSF038H20+ GGACAGCACACTAACTGCAGAGCCCAAAAAACACAGAAATAGAAATCCCAGAGACCAATA
____________________________________________________________
consensus GGACAGCACACTAACTGCAGAGCCCAAAAAACACAGAAATAGAAATCCCAGAGACCAATA
. : . : . : . : . : . :
JMSF052E11+ CACACCCTTTGCTTCTCTCCTCATCTCCACTCAAATGATTATCCAGAAAACAGAAGCTAC
JMSF038H20+ CACACCCTTTGCTTCTCTCCTCATCTCCACTCAAATGATTATCCAGAAAACAGAAGCTAC
____________________________________________________________
consensus CACACCCTTTGCTTCTCTCCTCATCTCCACTCAAATGATTATCCAGAAAACAGAAGCTAC
. : . : . : . : . : . :
JMSF052E11+ AGTGTTATGAACTCAGTGAGTCATCCCTCCTTCAAATGAGGGTTTTGAGGAATCTGGGAG
JMSF038H20+ AGTGTTATGAACTCAGTGAGTCATCCCTCCTTCAAATGAGGGTTTTGAGGAATCTGGGAG
____________________________________________________________
consensus AGTGTTATGAACTCAGTGAGTCATCCCTCCTTCAAATGAGGGTTTTGAGGAATCTGGGAG
. : . : . : . : . : . :
JMSF052E11+ TCTCAACAATCT
JMSF038H20+ TCTCAACAATCTTAGCATTCTAAGCATGTCAGTAACTCAATTATACTGCTATCTTTATCC
____________________________________________________________
consensus TCTCAACAATCTTAGCATTCTAAGCATGTCAGTAACTCAATTATACTGCTATCTTTATCC