Contig 003772:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030B10Sequence599003772 (5)ref|XP_009625664.1|1e-68PREDICTED: translin [Nicotiana tomentosiformis]719003772 (5)ref|XP_004249627.1|2e-100PREDICTED: translin [Solanum lycopersicum]
JMFS156B07Sequence502003772 (5)ref|XP_006367687.1|1e-43PREDICTED: translin-like [Solanum tuberosum]
JMSF035D15Sequence671003772 (5)ref|XP_009625664.1|5e-80PREDICTED: translin [Nicotiana tomentosiformis]729003772 (5)ref|XP_010253937.1|5e-106PREDICTED: translin isoform X2 [Nelumbo nucifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS156B07+ GATGGTTT
                      ____________________________________________________________
consensus GATGGTTT
 
. : . : . : . : . : . :
JMFS156B07+ CATGGTTGATTTGTTAAGTCTTAGGAAGGATCTTCAGTTGATTAGGGAGAAAAATGTAGC
rJMFF030B10- AAAATGTAGC
                      ____________________________________________________________
consensus CATGGTTGATTTGTTAAGTCTTAGGAAGGATCTTCAGTTGATTAGGGAGAAAAATGTAGC
 
. : . : . : . : . : . :
JMFS156B07+ ACCCGGGACAATTTCCTACAGATTTGTTGAGTTCGCTACATCGCACTAGACTTTTCTTAC
rJMFF030B10- ACCCGGGACAATTTCCTACAGATTTGTTGAGTTCGCTACATCGCACTAGACTTTTCTTAC
rJMSF035D15- GATTTGTTGAGTTCGCTACATCGCACTAGACTTTTCTTAC
                      ____________________________________________________________
consensus ACCCGGGACAATTTCCTACAGATTTGTTGAGTTCGCTACATCGCACTAGACTTTTCTTAC
 
. : . : . : . : . : . :
JMFS156B07+ AATTGTACATAGTTTCCTTAAGTTTGTAAGATTTTTCAGATGTGCAAAAAAACAGTAATA
rJMFF030B10- AATTGTACATAGTTTCCTTAAGTTTGTAAGATTTTTCAGATGTGCAAAAAAACAGTAATA
rJMSF035D15- AATTGTACATAGTTTCCTTAAGTTTGTAAGATTTTTCAGATGTGCAAAAAAACAGTAATA
                      ____________________________________________________________
consensus AATTGTACATAGTTTCCTTAAGTTTGTAAGATTTTTCAGATGTGCAAAAAAACAGTAATA
 
. : . : . : . : . : . :
JMFS156B07+ CATCTGTAAGGAATCCAGAATTTCAAGAGAAATTGAGATTGCAAAGGTCACAAAATCATG
rJMFF030B10- CATCTGTAAGGAATCCAGAATTTCAAGAGAAATTGAGATTGCAAAGGTCACAAAATCATG
rJMSF035D15- CATCTGTAAGGAATCCAGAATTTCAAGAGAAATTGAGATTGCAAAGGTCACAAAATCATG
                      ____________________________________________________________
consensus CATCTGTAAGGAATCCAGAATTTCAAGAGAAATTGAGATTGCAAAGGTCACAAAATCATG
 
. : . : . : . : . : . :
JMFS156B07+ CTGCTTCTTCAGTTTCCTTTGAATTTGCATTGGTTGCCAAGCCTCGAATCTTTACATCAT
rJMFF030B10- CTGCTTCTTCAGTTTCCTTTGAATTTGCATTGGTTGCCAAGCCTCGAATCTTTACATCAT
rJMSF035D15- CTGCTTCTTCAGTTTCCTTTGAATTTGCATTGGTTGCCAAGCCTCGAATCTTTACATCAT
                      ____________________________________________________________
consensus CTGCTTCTTCAGTTTCCTTTGAATTTGCATTGGTTGCCAAGCCTCGAATCTTTACATCAT
 
. : . : . : . : . : . :
JMFS156B07+ AATAAACTTCTTCCACTTTTCTAAGGTCATATTTCATTCCATCAAACTTTTTACGCAAGA
rJMFF030B10- AATAAACTTCTTCCACTTTTCTAAGGTCATATTTCATTCCATCAAACTTTTTACGCAAGA
rJMSF035D15- AATAAACTTCTTCCACTTTTCTAAGGTCATATTTCATTCCATCAAACTTTTTACGCAAGA
                      ____________________________________________________________
consensus AATAAACTTCTTCCACTTTTCTAAGGTCATATTTCATTCCATCAAACTTTTTACGCAAGA
 
. : . : . : . : . : . :
JMFS156B07+ AATCATTTCGAAGATTAAGCATGCGGAATGCAGCATGAAGATCTGTCATGAATTTTAGAA
rJMFF030B10- AATCATTTCGAAGATTAAGCATGCGGAATGCAGCATGAAGATCTGTCATGAATTTTAGAA
rJMSF035D15- AATCATTTCGAAGATTAAGCATGCGGAATGCAGCATGAAGATCTGTCATGAATTTTAGAA
                      ____________________________________________________________
consensus AATCATTTCGAAGATTAAGCATGCGGAATGCAGCATGAAGATCTGTCATGAATTTTAGAA
 
. : . : . : . : . : . :
JMFS156B07+ CCTGGCGGGGGCAATCATAATCCCCAGCTGTCACTTTGTTCACCACATACCTAGGCAACT
rJMFF030B10- CCTGGCGGGGGCAATCATAATCCCCAGCTGTCACTTTGTTCACCACATACCTAGGCAACT
rJMSF035D15- CCTGGCGGGGGCAATCATAATCCCCAGCTGTCACTTTGTTCACCACATACCTAGGCAACT
JMSF035D15+ CCTAGGCAACT
                      ____________________________________________________________
consensus CCTGGCGGGGGCAATCATAATCCCCAGCTGTCACTTTGTTCACCACATACCTAGGCAACT
 
. : . : . : . : . : . :
JMFS156B07+ CATTAGACATGAAA
rJMFF030B10- CATTAGACATGAAACAAATCCCAATAAGGTAATCTTCAGTATCAAGTCCAAAATCTGAAG
rJMSF035D15- CATTAGACATGAAACAAATCCCAATAAGGTAATCTTCAGTATCAAGTCCAAAATCTGAAG
JMFF030B10+ TAATCTTCAGTATCAAGTCCAAAATCTGAAG
JMSF035D15+ CATTAGACATGAAACAAATCCCAATAAGGTAATCTTCAGTATCAAGTCCAAAATCTGAAG
                      ____________________________________________________________
consensus CATTAGACATGAAACAAATCCCAATAAGGTAATCTTCAGTATCAAGTCCAAAATCTGAAG
 
. : . : . : . : . : . :
rJMFF030B10- CATTTAAGCCCAATTTTTCCTCAACTTCATTATGCAGGAGAAGAGTCCCTGTCTCCAGCC
rJMSF035D15- CATTTAAGCCCAATTTTTCCTCAACTTCATTATGCAGGAGAAGAGTCCCTGTCTCCAGCC
JMFF030B10+ CATTTAAGCCCAATTTTTCCTCAACTTCATTATGCAGGAGAAGAGTCCCTGTCTCCAGCC
JMSF035D15+ CATTTAAGCCCAATTTTTCCTCAACTTCATTATGCAGGAGAAGAGTCCCTGTCTCCAGCC
                      ____________________________________________________________
consensus CATTTAAGCCCAATTTTTCCTCAACTTCATTATGCAGGAGAAGAGTCCCTGTCTCCAGCC
 
. : . : . : . : . : . :
rJMFF030B10- AATGCATAAATGCCAGCAATGACACCACAGTCTGTGTCTCACTCCTCCAAAGACCATTAT
rJMSF035D15- AATGCATAAATGCCAGCAATGACACCACAGTCTGTGTCTCACTCCTCCAAAGACCATTAT
JMFF030B10+ AATGCATAAATGCCAGCAATGACACCACAGTCTGTGTCTCACTCCTCCAAAGACCATTAT
JMSF035D15+ AATGCATAAATGCCAGCAATGACACCACAGTCTGTGTCTCACTCCTCCAAAGACCATTAT
                      ____________________________________________________________
consensus AATGCATAAATGCCAGCAATGACACCACAGTCTGTGTCTCACTCCTCCAAAGACCATTAT
 
. : . : . : . : . : . :
rJMFF030B10- ACCTATAATACTGTCCAGGGCATTCCCGCAGAATTTCTGAAATCTTGGTATACAGTTCCT
rJMSF035D15- ACCTATAATACTGTCCAGGGCATTCCCGCAGAATTTCTGAAATCTTGGTATACAGTTCCT
JMFF030B10+ ACCTATAATACTGTCCAGGGCATTCCCGCAGAATTTCTGAAATCTTGGTATACAGTTCCT
JMSF035D15+ ACCTATAATACTGTCCAGGGCATTCCCGCAGAATTTCTGAAATCTTGGTATACAGTTCCT
                      ____________________________________________________________
consensus ACCTATAATACTGTCCAGGGCATTCCCGCAGAATTTCTGAAATCTTGGTATACAGTTCCT
 
. : . : . : . : . : . :
rJMFF030B10- TCAGCACCCCGATATGAACACTTGCTTTCTCTAAGA
rJMSF035D15- TCAGCACCCCGATATGAACACTTGCTTTCTCTAAGACCTCGGGAACGGGGCGAGACTGAT
JMFF030B10+ TCAGCACCCCGATATGAACACTTGCTTTCTCTAAGACCTCGGGAACGGGGCGAGACTGAT
JMSF035D15+ TCAGCACCCCGATATGAACACTTGCTTTCTCTAAGACCTCGGGAACGGGGCGAGACTGAT
                      ____________________________________________________________
consensus TCAGCACCCCGATATGAACACTTGCTTTCTCTAAGACCTCGGGAACGGGGCGAGACTGAT
 
. : . : . : . : . : . :
rJMSF035D15- GAATGAGGAGGAGGCTAGAGTGAATGAGC
JMFF030B10+ GAATGAGGAGGAGGCTAGAGTGAATGAGCCGAGTAGTGGACTCCATCTCCATAGCCACAG
JMSF035D15+ GAATGAGGAGGAGGCTAGAGTGAATGAGCCGAGTAGTGGACTCCATCTCCATAGCCACAG
                      ____________________________________________________________
consensus GAATGAGGAGGAGGCTAGAGTGAATGAGCCGAGTAGTGGACTCCATCTCCATAGCCACAG
 
. : . : . : . : . : . :
JMFF030B10+ CTCTAATTCGATCGTGTAAGCTCGAAGAATCCAGCAAATTCTTCCGGAATTCCTCGAACT
JMSF035D15+ CTCTAATTCGATCGTGTAAGCTCGAAGAATCCAGCAAATTCTTCCGGAATTCCTCGAACT
                      ____________________________________________________________
consensus CTCTAATTCGATCGTGTAAGCTCGAAGAATCCAGCAAATTCTTCCGGAATTCCTCGAACT
 
. : . : . : . : . : . :
JMFF030B10+ GCTTCTCCAGCTTCTCTGAAGAATGGGAGAGAGGCGCGTCGAGATCACCGGCCGCCATTG
JMSF035D15+ GCTTCTCCAGCTTCTCTGAAGAATGGGAGAGAGGCGCGTCGAGATCACCGGCCGCCATTG
                      ____________________________________________________________
consensus GCTTCTCCAGCTTCTCTGAAGAATGGGAGAGAGGCGCGTCGAGATCACCGGCCGCCATTG
 
. : . : . : . : . : . :
JMFF030B10+ AAGTGCAGTATGAAACCGAAACGAGGACGTTGCAAAGAGGGACTGAGAAATTGCGAGCGG
JMSF035D15+ AAGTGCAGTATGAAACCGAAACGAGGACGTTGCAAAGAGGGACTGAGAAATTGCGAGCGG
                      ____________________________________________________________
consensus AAGTGCAGTATGAAACCGAAACGAGGACGTTGCAAAGAGGGACTGAGAAATTGCGAGCGG
 
. : . : . : . : . : . :
JMFF030B10+ GAATGAGAGTGGGAGGGAAGGTGGGTTTAGGGTTTAAGGCGGTGCGAGGGAGTAGAGAAA
JMSF035D15+ GAATGAGAGTGGGAGGGAAGGTGGGTTTAGGGTTTAAGGCGGTGCGAGGGAGTAGAGAAA
                      ____________________________________________________________
consensus GAATGAGAGTGGGAGGGAAGGTGGGTTTAGGGTTTAAGGCGGTGCGAGGGAGTAGAGAAA
 
. : . : . : . : . : . :
JMFF030B10+ TGGCGTTCCGGAACACCGATTTCATCTT
JMSF035D15+ TGGCGTTCCGGAACACCGATTTCATCTTGGTATGCCCGACTTTGTGGTACAATATTTGTC
                      ____________________________________________________________
consensus TGGCGTTCCGGAACACCGATTTCATCTTGGTATGCCCGACTTTGTGGTACAATATTTGTC