Contig 003765:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004P09Sequence232003765 (3)
JMSF034E24Sequence674003765 (3)ref|XP_009605537.1|6e-89PREDICTED: ER membrane protein complex subunit 7 homolog isoform X3 [Nicotiana 660003765 (3)ref|XP_009605537.1|3e-78PREDICTED: ER membrane protein complex subunit 7 homolog isoform X3 [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF034E24- ATGATGGAAGAGTAAAGTGTTATGTTTTTAGAATGAAAGGAAACTTAA
                      ____________________________________________________________
consensus ATGATGGAAGAGTAAAGTGTTATGTTTTTAGAATGAAAGGAAACTTAA
 
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rJMSF034E24- ATACTGCCACTATTTGAGAATCAATGAAAAGGGAAGGGAAATCTATAGCTTGACATCAGT
                      ____________________________________________________________
consensus ATACTGCCACTATTTGAGAATCAATGAAAAGGGAAGGGAAATCTATAGCTTGACATCAGT
 
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rJMSF034E24- AAAAATTCTCGTTTTATGAAAATGGAAATCTGCAGTGTTTCAGCCTCCGGATGCAGTTAG
                      ____________________________________________________________
consensus AAAAATTCTCGTTTTATGAAAATGGAAATCTGCAGTGTTTCAGCCTCCGGATGCAGTTAG
 
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rJMSF034E24- GATGGCTCTGTTGCTACTCCGATTGTCTAGTGCTCCTTTGTGCCGCGGCCCCGGCCCCGG
                      ____________________________________________________________
consensus GATGGCTCTGTTGCTACTCCGATTGTCTAGTGCTCCTTTGTGCCGCGGCCCCGGCCCCGG
 
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rJMSF034E24- GTAGTAAGCTCGAAAGGGTGGGAACTCCTTGGCTTCTCATTTCCTCTTGTGCACGTCTGA
JMSF034E24+ TTGTGCACGTCTGA
                      ____________________________________________________________
consensus GTAGTAAGCTCGAAAGGGTGGGAACTCCTTGGCTTCTCATTTCCTCTTGTGCACGTCTGA
 
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rJMSF034E24- TTTCTTCGGGATCCATATTTTCAACCAATTTAGGCATTACAAACACCACAAGCAGCATGA
JMSF034E24+ TTTCTTCGGGATCCATATTTTCAACCAATTTAGGCATTACAAACACCACAAGCAGCATGA
                      ____________________________________________________________
consensus TTTCTTCGGGATCCATATTTTCAACCAATTTAGGCATTACAAACACCACAAGCAGCATGA
 
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rJMSF034E24- AGCCAACCATCAAACCCATGGGGCTTTTTACTATAGACATTACGGAGAACGGTTCCCTAA
JMSF034E24+ AGCCAACCATCAAACCCATGGGGCTTTTTACTATAGACATTACGGAGAACGGTTCCCTAA
                      ____________________________________________________________
consensus AGCCAACCATCAAACCCATGGGGCTTTTTACTATAGACATTACGGAGAACGGTTCCCTAA
 
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rJMSF034E24- TCTCATAGTACTGCTCCTCCCTCAATGGTTCCAACACTAGTTCAGTTAAACTCCTTCTAT
JMSF034E24+ TCTCATAGTACTGCTCCTCCCTCAATGGTTCCAACACTAGTTCAGTTAAACTCCTTCTAT
                      ____________________________________________________________
consensus TCTCATAGTACTGCTCCTCCCTCAATGGTTCCAACACTAGTTCAGTTAAACTCCTTCTAT
 
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rJMSF034E24- TCTCCGTCAGTGCTGCTTGAACCTTACCTGGGTTTCTGGCACTCACATCAACTCGGACTG
JMSF034E24+ TCTCCGTCAGTGCTGCTTGAACCTTACCTGGGTTTCTGGCACTCACATCAACTCGGACTG
                      ____________________________________________________________
consensus TCTCCGTCAGTGCTGCTTGAACCTTACCTGGGTTTCTGGCACTCACATCAACTCGGACTG
 
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rJMSF034E24- GGGAGAAGAAATAGCCTATTGCATCCACTTCAATCAGATGCGTCCCAGCTGGCACGTTAT
JMSF034E24+ GGGAGAAGAAATAGCCTATTGCATCCACTTCAATCAGATGCGTCCCAGCTGGCACGTTAT
                      ____________________________________________________________
consensus GGGAGAAGAAATAGCCTATTGCATCCACTTCAATCAGATGCGTCCCAGCTGGCACGTTAT
 
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rJMSF034E24- GGAATGAAAAATATCCATCAGGTCTCAGAAAAGTAACTCTTTGGCCACCATTGAGTAACA
JMSF034E24+ GGAATGAAAAATATCCATCAGGTCTCAGAAAAGTAACTCTTTGGCCACCATTGAGTAACA
                      ____________________________________________________________
consensus GGAATGAAAAATATCCATCAGGTCTCAGAAAAGTAACTCTTTGGCCACCATTGAGTAACA
 
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rJMSF034E24- CCTTGACGTCTG
JMSF004P09+ TT
JMSF034E24+ CCTTGACGTCTGAAGCCTTAGCCAGCAGACCAGATCCTTTCAAGTTAAAGCCTGGTAATT
                      ____________________________________________________________
consensus CCTTGACGTCTGAAGCCTTAGCCAGCAGACCAGATCCTTTCAAGTTAAAGCCTGGTAATT
 
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JMSF004P09+ TCACACGTCCGTTTATAGTATACCCATCGCTGTTCCCGGAAGCAACGGCGAGAGACCAGA
JMSF034E24+ TCACACGTCCGTTTATAGTATACCCATCGCTGTTCCCGGAAGCAACGGCGAGAGACCAGA
                      ____________________________________________________________
consensus TCACACGTCCGTTTATAGTATACCCATCGCTGTTCCCGGAAGCAACGGCGAGAGACCAGA
 
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JMSF004P09+ AGCAGAGTTGGAGAAGAAAGAGTAGTGGGAAAAAGATCGGCCAAGTCATAGCGATTTGCT
JMSF034E24+ AGCAGAGTTGGAGAAGAAAGAGTAGTGGGAAAAAGATCGGCCAAGTCATAGCGATTTGCT
                      ____________________________________________________________
consensus AGCAGAGTTGGAGAAGAAAGAGTAGTGGGAAAAAGATCGGCCAAGTCATAGCGATTTGCT
 
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JMSF004P09+ ATTGTGAGTATAGATTACAACGAAAGAAACTGAAAAAGCGATTTGAAAATCCGATCAAAA
JMSF034E24+ ATTGTGAGTATAGATTACAACGAAAGAAACTGAAAAAGCGATTTGAAAATCCGATCAAAA
                      ____________________________________________________________
consensus ATTGTGAGTATAGATTACAACGAAAGAAACTGAAAAAGCGATTTGAAAATCCGATCAAAA
 
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JMSF004P09+ CGAGGGAAGGAATTTCTCCTCGCGAGGGAGTCGGCACTGGTATGGCGTC
JMSF034E24+ CGAGGGAAGGAATTTCTCCTCGCGAGGGAGTCGGCACTGGTATGGCGTCGGAAACCCACC
                      ____________________________________________________________
consensus CGAGGGAAGGAATTTCTCCTCGCGAGGGAGTCGGCACTGGTATGGCGTCGGAAACCCACC