clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS010D08 | Sequence | 639 | 003762 (4) | emb|CDP09904.1| | 1e-94 | unnamed protein product [Coffea canephora] | |||||
JMSF009E05 | Sequence | 400 | 003762 (4) | emb|CDP09904.1| | 7e-35 | unnamed protein product [Coffea canephora] | 703 | 003400 (6) | ref|XP_003635538.1| | 1e-130 | PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera] |
JMSF033O08 | Sequence | 625 | 003762 (4) | emb|CDP09904.1| | 6e-72 | unnamed protein product [Coffea canephora] | 712 | 003400 (6) | ref|XP_003635538.1| | 3e-131 | PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera] |
JMSF041D05 | Sequence | 818 | 003762 (4) | emb|CDP09904.1| | 3e-120 | unnamed protein product [Coffea canephora] | 734 | 003400 (6) | ref|XP_003635538.1| | 1e-144 | PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF041D05+ TACAAGCGGTTTTTGCACCCAAATTCGTTACAATCATG
____________________________________________________________
consensus TACAAGCGGTTTTTGCACCCAAATTCGTTACAATCATG
. : . : . : . : . : . :
JMSF041D05+ TCTCTGGTTCGGAAGAAATTTGCTCCAAGGCGATCCATTTTGTTAACAAAGCATATCCTA
____________________________________________________________
consensus TCTCTGGTTCGGAAGAAATTTGCTCCAAGGCGATCCATTTTGTTAACAAAGCATATCCTA
. : . : . : . : . : . :
JMFS010D08+ GGACTCCATACTANTCCGCTTGTCTCCAAACAGTTTCTGATTGAGGTTCTACACCCGCA
JMSF041D05+ GGGACTCCATACTTATCCGCTTGTCTCCAAACAGTTTCTGATTGAGGTTCTACACCCGCA
____________________________________________________________
consensus GGGACTCCATACTTATCCGCTTGTCTCCAAACAGTTTCTGATTGAGGTTCTACACCCGCA
. : . : . : . : . : . :
JMFS010D08+ ACACTGTCAAACAAGCATATAGCACCGTCCAAAACTCTGAGCGCCCGTTCTACTTCAAGC
JMSF041D05+ ACACTGTCAAACAAGCATATAGCACCGTCCAAAACTCTGAGCGCCCGTTCTACTTCAAGC
JMSF033O08+ TCTGAGCGCCCGTTCTACTTCAAGC
____________________________________________________________
consensus ACACTGTCAAACAAGCATATAGCACCGTCCAAAACTCTGAGCGCCCGTTCTACTTCAAGC
. : . : . : . : . : . :
JMFS010D08+ GTGAAGTCAACATGGCCGGGAGTATCGATTATGTTAATCCGGTGCTTGTTCCAGAAAGTG
JMSF041D05+ GTGAAGTCAACATGGCCGGGAGTATCGATTATGTTAATCCGGTGCTTGTTCCAGAAAGTG
JMSF033O08+ GTGAAGTCAACATGGCCGGGAGTATCGATTATGTTAATCCGGTGCTTGTTCCAGAAAGTG
____________________________________________________________
consensus GTGAAGTCAACATGGCCGGGAGTATCGATTATGTTAATCCGGTGCTTGTTCCAGAAAGTG
. : . : . : . : . : . :
JMFS010D08+ GTGGTCGCAGCAGAAGTAATGGTAATCCCTCTCTCTTGCTCCTGTTCCATCCAGTCCATC
JMSF041D05+ GTGGTCGCAGCAGAAGTAATGGTAATCCCTCTCTCTTGCTCCTGTTCCATCCAGTCCATC
JMSF033O08+ GTGGTCGCAGCAGAAGTAATGGTAATCCCTCTCTCTTGCTCCTGTTCCATCCAGTCCATC
____________________________________________________________
consensus GTGGTCGCAGCAGAAGTAATGGTAATCCCTCTCTCTTGCTCCTGTTCCATCCAGTCCATC
. : . : . : . : . : . :
JMFS010D08+ GTTGCTGTCCCCTCGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
JMSF041D05+ GTTGCTGTCCCCTCGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
JMSF009E05+ CGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
JMSF033O08+ GTTGCTGTCCCCTCGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
____________________________________________________________
consensus GTTGCTGTCCCCTCGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
. : . : . : . : . : . :
JMFS010D08+ CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
JMSF041D05+ CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
JMSF009E05+ CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
JMSF033O08+ CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
____________________________________________________________
consensus CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
. : . : . : . : . : . :
JMFS010D08+ TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
JMSF041D05+ TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
JMSF009E05+ TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
JMSF033O08+ TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
____________________________________________________________
consensus TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
. : . : . : . : . : . :
JMFS010D08+ TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
JMSF041D05+ TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
JMSF009E05+ TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
JMSF033O08+ TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
____________________________________________________________
consensus TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
. : . : . : . : . : . :
JMFS010D08+ ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
JMSF041D05+ ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
JMSF009E05+ ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
JMSF033O08+ ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
____________________________________________________________
consensus ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
. : . : . : . : . : . :
JMFS010D08+ TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
JMSF041D05+ TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
JMSF009E05+ TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
JMSF033O08+ TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
____________________________________________________________
consensus TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
. : . : . : . : . : . :
JMFS010D08+ GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCA
JMSF041D05+ GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCATCTCTCTCCCTCTCTCTCTA
JMSF009E05+ GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCATCTCTCTCCC
JMSF033O08+ GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCATCTCTCTCCCTCTCTCTCTA
____________________________________________________________
consensus GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCATCTCTCTCCCTCTCTCTCTA
. : . : . : . : . : . :
JMSF041D05+ TTCTCTCTCGCAGCGGCTTGTATATATATATATGTCTATCCTACTTCTACTACTGGC
JMSF033O08+ TTCTCTCTCGCAGCGGCTTGTATATATATATATGTCTATCCTACTTCTACTACTGGCTGC
____________________________________________________________
consensus TTCTCTCTCGCAGCGGCTTGTATATATATATATGTCTATCCTACTTCTACTACTGGCTGC