Contig 003741:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031I24Sequence654003741 (4)ref|XP_009617770.1|1e-59PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Nicotiana tomentosi732003741 (4)ref|XP_009617770.1|4e-63PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Nicotiana tomentosi
JMSF037G08Sequence658003741 (4)ref|XP_009617770.1|4e-71PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Nicotiana tomentosi774003741 (4)ref|XP_009617770.1|1e-77PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMSF031I24-                                                                  AAAT
rJMSF037G08-                                                                  AAAT
                      ____________________________________________________________
consensus                                                                     AAAT
 
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rJMSF031I24-          ATGTATGTATCAATGCCACATACAAATTTCGTACAATGAAAAGAAAAAAGGAGATAAAAT
rJMSF037G08-          ATGTATGTATCAATGCCACATACAAATTTCGTACAATGAAAAGAAAAAAGGAGATAAAAT
                      ____________________________________________________________
consensus             ATGTATGTATCAATGCCACATACAAATTTCGTACAATGAAAAGAAAAAAGGAGATAAAAT
 
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rJMSF031I24-          AGAGGTTGTAAGTGGAATATGGCTAGTCCTAGTTGTTAAAATTTGGCAGACATGAGAGAC
rJMSF037G08-          AGAGGTTGTAAGTGGAATATGGCTAGTCCTAGTTGTTAAAATTTGGCAGACATGAGAGAC
                      ____________________________________________________________
consensus             AGAGGTTGTAAGTGGAATATGGCTAGTCCTAGTTGTTAAAATTTGGCAGACATGAGAGAC
 
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rJMSF031I24-          ATCATTTTCAAAATAGAGTCTGCATAATATGGTTAACAAAACAGGATCCTTCTTCTTCTT
rJMSF037G08-          ATCATTTTCAAAATAGAGTCTGCATAATATGGTTAACAAAACAGGATCCTTCTTCTTCTT
                      ____________________________________________________________
consensus             ATCATTTTCAAAATAGAGTCTGCATAATATGGTTAACAAAACAGGATCCTTCTTCTTCTT
 
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rJMSF031I24-          CATACCTCCTTCTAAACGCCTTATGATGACTTCTTAAGCTTTGCTAATTCATCCAACACA
rJMSF037G08-          CATACCTCCTTCTAAACGCCTTATGATGACTTCTTAAGCTTTGCTAATTCATCCAACACA
                      ____________________________________________________________
consensus             CATACCTCCTTCTAAACGCCTTATGATGACTTCTTAAGCTTTGCTAATTCATCCAACACA
 
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rJMSF031I24-          TTTTTTAGAGGCTCTTGCACCTTATTTTCCTTGCCCTTCAAGGATCGGACAAGTGCAAAA
rJMSF037G08-          TTTTTTAGAGGCTCTTGCACCTTATTTTCCTTGCCCTTCAAGGATCGGACAAGTGCAAAA
JMSF037G08+                                                      ATCGGACAAGTGCAAAA
                      ____________________________________________________________
consensus             TTTTTTAGAGGCTCTTGCACCTTATTTTCCTTGCCCTTCAAGGATCGGACAAGTGCAAAA
 
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rJMSF031I24-          ACTTCATCAACAGATTCAGGGTGAAAGTTGGCAATCATGCACATCTCGCCATCAGATACA
rJMSF037G08-          ACTTCATCAACAGATTCAGGGTGAAAGTTGGCAATCATGCACATCTCGCCATCAGATACA
JMSF037G08+           ACTTCATCAACAGATTCAGGGTGAAAGTTGGCAATCATGCACATCTCGCCATCAGATACA
JMSF031I24+                ATCAACAGATTCAGGGTGAAAGTTGGCAATCATGCACATCTCGCCATCAGATACA
                      ____________________________________________________________
consensus             ACTTCATCAACAGATTCAGGGTGAAAGTTGGCAATCATGCACATCTCGCCATCAGATACA
 
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rJMSF031I24-          CCATGCTCCTTCAAAGGTTGGAGTGCTTGTTTAACCGTCTTTGAATTCTCATAAAGTTTG
rJMSF037G08-          CCATGCTCCTTCAAAGGTTGGAGTGCTTGTTTAACCGTCTTTGAATTCTCATAAAGTTTG
JMSF037G08+           CCATGCTCCTTCAAAGGTTGGAGTGCTTGTTTAACCGTCTTTGAATTCTCATAAAGTTTG
JMSF031I24+           CCATGCTCCTTCAAAGGTTGGAGTGCTTGTTTAACCGTCTTTGAATTCTCATAAAGTTTG
                      ____________________________________________________________
consensus             CCATGCTCCTTCAAAGGTTGGAGTGCTTGTTTAACCGTCTTTGAATTCTCATAAAGTTTG
 
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rJMSF031I24-          TGTCTTCGTGCATACATCAGTCCATTGTCAAATGATACAGGAAGTTTTATGGTTGGATCT
rJMSF037G08-          TGTCTTCGTGCATACATCAGTCCATTGTCAAATGATACAGGAAGTTTTATGGTTGGATCT
JMSF037G08+           TGTCTTCGTGCATACATCAGTCCATTGTCAAATGATACAGGAAGTTTTATGGTTGGATCT
JMSF031I24+           TGTCTTCGTGCATACATCAGTCCATTGTCAAATGATACAGGAAGTTTTATGGTTGGATCT
                      ____________________________________________________________
consensus             TGTCTTCGTGCATACATCAGTCCATTGTCAAATGATACAGGAAGTTTTATGGTTGGATCT
 
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rJMSF031I24-          TCAGAGAGTACAACCATTTGCTCCTGGATTCCATGCAAGATTTCTGCAGCCTCACAATCC
rJMSF037G08-          TCAGAGAGTACAACCATTTGCTCCTGGATTCCATGCAAGATTTCTGCAGCCTCACAATCC
JMSF037G08+           TCAGAGAGTACAACCATTTGCTCCTGGATTCCATGCAAGATTTCTGCAGCCTCACAATCC
JMSF031I24+           TCAGAGAGTACAACCATTTGCTCCTGGATTCCATGCAAGATTTCTGCAGCCTCACAATCC
                      ____________________________________________________________
consensus             TCAGAGAGTACAACCATTTGCTCCTGGATTCCATGCAAGATTTCTGCAGCCTCACAATCC
 
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rJMSF031I24-          AGCAGGCATTTAGTATTCCCAGAAATTTCTTGCTCAACCCTGAGCTCCAAAGGAGTAGGT
rJMSF037G08-          AGCAGGCATTTAGTATTCCCAGAAATTTCTTGCTCAACCCTGAGCTCCAAAGGAGTAGGT
JMSF037G08+           AGCAGGCATTTAGTATTCCCAGAAATTTCTTGCTCAACCCTGAGCTCCAAAGGAGTAGGT
JMSF031I24+           AGCAGGCATTTAGTATTCCCAGAAATTTCTTGCTCAACCCTGAGCTCCAAAGGAGTAGGT
                      ____________________________________________________________
consensus             AGCAGGCATTTAGTATTCCCAGAAATTTCTTGCTCAACCCTGAGCTCCAAAGGAGTAGGT
 
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rJMSF031I24-          GCTTTTGCAGTTTGGCCTTTGCCACTTTTTCCAACCTTGTCTCCTTTGCCAACTGGTTTA
rJMSF037G08-          GCTTTTGCAGTTTGGCCTTTGCCACTTTTTTCAACCTTGTCTCCTTTGCCAACTGGTTTA
JMSF037G08+           GCTTTTGCAGTTTGGCCTTTGCCACTTTTTTCAACCTTGTCTCCTTTGCCAACTGGTTTA
JMSF031I24+           GCTTTTGCAGTTTGGCCTTTGCCACTTTTTCCAACCTTGTCTCCTTTGCCAACTGGTTTA
                      ____________________________________________________________
consensus             GCTTTTGCAGTTTGGCCTTTGCCACTTTTTTCAACCTTGTCTCCTTTGCCAACTGGTTTA
 
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rJMSF031I24-          TCTGCTTTCCCATTAGATTTCATGAAACTCCCATCCAGTGGAATCATCAGAATCGAATTG
rJMSF037G08-          TCTGCTTTCCCATTAGATTTCATGAAACTCCCATCCAGT-GAATCATCAGAATCGAATTG
JMSF037G08+           TCTGCTTTCCCATTAGATTTCATGAAACTCCCATCCAGT-GAATCATCAGAATCGAATTG
JMSF031I24+           TCTGCTTTCCCATTAGATTTCATGAAACTCCCATCCAGT-GAATCATCAGAATCGAATTG
                      ____________________________________________________________
consensus             TCTGCTTTCCCATTAGATTTCATGAAACTCCCATCCAGT-GAATCATCAGAATCGAATTG
 
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rJMSF031I24-          AACTT                                                       
rJMSF037G08-          AACTTTCCTTCCTTTCTT                                          
JMSF037G08+           AACTTTCCTTCCTTTCTTTGTCTTTCCTGAGCTGTCATCCTTCCCTTTTGCAGATGAAGT
JMSF031I24+           AACTTTCCTTCCTTTCTTTGTCTTTCCTGAGCTGTCATCCTTCCCTTTTGCAGATGAAGT
                      ____________________________________________________________
consensus             AACTTTCCTTCCTTTCTTTGTCTTTCCTGAGCTGTCATCCTTCCCTTTTGCAGATGAAGT
 
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JMSF037G08+           TTTGAGAGCAGATTTTCCTCCATTAGGCTGCGATTTCCCTTTCCCTCCTTTTTCCGTCAT
JMSF031I24+           TTTGAGAGCAGATTTTCCTCCATTAGGCTGCGATTTCCCTTTCCCTCCTTTTTCCGTCAT
                      ____________________________________________________________
consensus             TTTGAGAGCAGATTTTCCTCCATTAGGCTGCGATTTCCCTTTCCCTCCTTTTTCCGTCAT
 
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JMSF037G08+           TACTCTTCACTGAAGAGCGAAGAGGGAGGAGCTTCAACTGAGCAGTGCCGCCAATAAAGC
JMSF031I24+           TACTCTTCACTGAAGAGCGAAGAGGGAGGAGCTTCAACTGAGCAGTGCCGCCAATAAAGC
                      ____________________________________________________________
consensus             TACTCTTCACTGAAGAGCGAAGAGGGAGGAGCTTCAACTGAGCAGTGCCGCCAATAAAGC
 
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JMSF037G08+           AGAGCAGAGTATTATATTAGGGAGAAACGTGAATTGAGTGC                   
JMSF031I24+           AGAGCAGAGTATTATATTAGGGAGAAACGTGAATTGAGTGCAGAAGAATAGAGAAGAGTC
                      ____________________________________________________________
consensus             AGAGCAGAGTATTATATTAGGGAGAAACGTGAATTGAGTGCAGAAGAATAGAGAAGAGTC