Contig 003716:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF035M12+                                                      TGTCTCCCGTGTAATGC
                      ____________________________________________________________
consensus                                                        TGTCTCCCGTGTAATGC
 
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JMSF035M12+           ATTCAAACCGAATGTAACAAGTCCTCCCGTCCTCTTGAAAAAGCTGTTTAGCTTATCCCA
                      ____________________________________________________________
consensus             ATTCAAACCGAATGTAACAAGTCCTCCCGTCCTCTTGAAAAAGCTGTTTAGCTTATCCCA
 
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JMSF035M12+           CCTATCCATAGGTAGGCATCCATTAGAAAATCCAAACAGCCCGTCCTTCTGCTTTCTAAA
                      ____________________________________________________________
consensus             CCTATCCATAGGTAGGCATCCATTAGAAAATCCAAACAGCCCGTCCTTCTGCTTTCTAAA
 
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JMSF035M12+           TGGATGGCAGGGAGTCTTCAGATTGCCCACATCATAAAGAACTTGGTCTTGCAATGAACC
                      ____________________________________________________________
consensus             TGGATGGCAGGGAGTCTTCAGATTGCCCACATCATAAAGAACTTGGTCTTGCAATGAACC
 
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JMSF035M12+           CCCGAGCCGCAATCTCAAATGCTCAAAAGCTTGAATAGCCTTGGCAAAAAAGGGGTGAGA
                      ____________________________________________________________
consensus             CCCGAGCCGCAATCTCAAATGCTCAAAAGCTTGAATAGCCTTGGCAAAAAAGGGGTGAGA
 
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JMSF035M12+           TAAATCCAAGTTTAACACAGAAGATGACTCCCAAGGGCATTGGTTGTAGTTACACTTCTC
JMFF048C12+                                                        GTAGTTACACTTCTC
JMSF028N04+                        AACACAGAAGATGACTCCCAAGGGCATTGGTTGTAGTTACACTTCTC
                      ____________________________________________________________
consensus             TAAATCCAAGTTTAACACAGAAGATGACTCCCAAGGGCATTGGTTGTAGTTACACTTCTC
 
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JMSF035M12+           GTGAGGCCACCAATCAATGGTAGCACATATATAATTAGCATCCGTATCCGAAATCCTTGC
JMFF048C12+           GTGAGGCCACCAATCAATGGTAGCACATATATAATTAGCATCCGTATCCGAAATCCTTGC
JMSF028N04+           GTGAGGCCACCAATCAATGGTAGCACATATATAATTAGCGTCCGTATCCGAAATCCTTGC
                      ____________________________________________________________
consensus             GTGAGGCCACCAATCAATGGTAGCACATATATAATTAGCATCCGTATCCGAAATCCTTGC
 
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JMSF035M12+           AGTTGTTTCAATTAGAAGTTCAGCATGTTCGATAGTTTGTGTTAATGCTGTGGGAAAAAG
JMFF048C12+           AGTTGTTTCAATTAGAAGTTCAGCATGTTCGATAGTTTGTGTTAATGCTGTGGGAAAAAG
JMSF028N04+           AGTTGTTTCAATTAGAAGTTCAGCATGTTCGATAGTTTGTGTTAATGCTGTGGGAAAAAG
                      ____________________________________________________________
consensus             AGTTGTTTCAATTAGAAGTTCAGCATGTTCGATAGTTTGTGTTAATGCTGTGGGAAAAAG
 
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JMSF035M12+           TGCCAAAAAGAGTAACAATACAGCTGGGAAGTGCATTGATTATTGAACCCCAGAGCTTCA
JMFF048C12+           TGCCAAAAAGAGTAACAATACAGCTGGGAAGTGCATTGATTATTGAACCCCAGAGCTTCA
JMSF028N04+           TGCCAAAAAGAGTAACAATACAGCTGGGAAGTGCATTGATTATTGAACCCCAGAGCTTCA
                      ____________________________________________________________
consensus             TGCCAAAAAGAGTAACAATACAGCTGGGAAGTGCATTGATTATTGAACCCCAGAGCTTCA
 
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JMSF035M12+           CCACTAGCT                                                   
JMFF048C12+           CCACTAGCT                                                   
JMSF028N04+           CCACTAGCTGGTTGGAGGATTGTTGGGCAGAGGCCGGTAAAGGGCTTAATATGCCAAGTC
                      ____________________________________________________________
consensus             CCACTAGCTGGTTGGAGGATTGTTGGGCAGAGGCCGGTAAAGGGCTTAATATGCCAAGTC
 
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JMSF028N04+           CAGCACCCAGCGTCTCGAAAATGTGTGGCGGTACAAAGAAATAAAGTTGAACCTTCGCTA
                      ____________________________________________________________
consensus             CAGCACCCAGCGTCTCGAAAATGTGTGGCGGTACAAAGAAATAAAGTTGAACCTTCGCTA
 
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JMSF028N04+           CTAGCTATAGTTTTTTAGGTGAGTGGTAAGCGCTCGGTCTCCAAGCTAAAACACAGTAGA
                      ____________________________________________________________
consensus             CTAGCTATAGTTTTTTAGGTGAGTGGTAAGCGCTCGGTCTCCAAGCTAAAACACAGTAGA
 
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JMSF028N04+           ATTAAGACGCAGGGAGAAATCCGAAGCTTCCCAGAGCCAAGTGCATTAAAATTATGCAAA
                      ____________________________________________________________
consensus             ATTAAGACGCAGGGAGAAATCCGAAGCTTCCCAGAGCCAAGTGCATTAAAATTATGCAAA
 
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JMSF028N04+           ACCCAGATGAGAAGTAACCCCGAAGACTACAAATCCGCCATTAATGAGCTGAACTTCTGT
                      ____________________________________________________________
consensus             ACCCAGATGAGAAGTAACCCCGAAGACTACAAATCCGCCATTAATGAGCTGAACTTCTGT
 
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JMSF028N04+           ACAGCATACACCAATACTGGGAAGCGCGAAACACAATTTTGCTAAAAGATAATCCTTTTG
                      ____________________________________________________________
consensus             ACAGCATACACCAATACTGGGAAGCGCGAAACACAATTTTGCTAAAAGATAATCCTTTTG
 
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JMSF028N04+           TTTTTTCTCTCACTAAAATGCATAACACAAGTGACAAGTGTGTCAANAGCGTCATGCTCC
                      ____________________________________________________________
consensus             TTTTTTCTCTCACTAAAATGCATAACACAAGTGACAAGTGTGTCAANAGCGTCATGCTCC