Contig 003705:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043N03Sequence638003705 (3)ref|XP_009765070.1|4e-100PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X2 [Nic660002677 (2)ref|XP_011095475.1|1e-23PREDICTED: transcription initiation factor TFIID subunit 6 [Sesamum indicum]
JMSF026M16Sequence671003705 (3)ref|XP_009765070.1|7e-108PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X2 [Nic670000235 (181)ref|XP_004170962.1|1e-145PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like
JMSF048D07Sequence715003705 (3)ref|XP_009765070.1|1e-90PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X2 [Nic761002677 (2)ref|XP_011095475.1|6e-63PREDICTED: transcription initiation factor TFIID subunit 6 [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF048D07+ AAAGGATGAAGCCCAGAATCTGTTGCCAAACTCACAAGTGCTTCTTTCAAGAGTACA
JMSF026M16+ TCAAGAGTACA
                      ____________________________________________________________
consensus AAAGGATGAAGCCCAGAATCTGTTGCCAAACTCACAAGTGCTTCTTTCAAGAGTACA
 
. : . : . : . : . : . :
JMSF048D07+ GAGTTAGATCTATTCACTACCAAATCCGTAATTTTTTCATAGTATAACTGAAGTTCACGG
JMFF043N03+ ATTTTTTCATAGTATAACTGAAGTTCACGG
JMSF026M16+ GAGTTAGATCTATTCACTACCAAATCCGTAATTTTTTCATAGTATAACTGAAGTTCACGG
                      ____________________________________________________________
consensus GAGTTAGATCTATTCACTACCAAATCCGTAATTTTTTCATAGTATAACTGAAGTTCACGG
 
. : . : . : . : . : . :
JMSF048D07+ GATAGTACATGCTTTACAGGTAACTTGAGGTCAACTGAACCTCCATCTTCTTTATAGTCC
JMFF043N03+ GATAGTACATGCTTACCAGGTAACTGNAGGTCAACTGAACCTCCATCTTCTTTATAGTCC
JMSF026M16+ GATAGTACATGCTTTACAGGTAACTTGAGGTCAACTGAACCTCCATCTTCTTTATAGTCC
                      ____________________________________________________________
consensus GATAGTACATGCTTTACAGGTAACTTGAGGTCAACTGAACCTCCATCTTCTTTATAGTCC
 
. : . : . : . : . : . :
JMSF048D07+ ATCATTCTATTATCTTGTGGTGCTGCTAGTGCTTCATGAGGAGGATTTTCAGGAATAGAA
JMFF043N03+ ATCATTCTATTATCTTGTGGTGCTGCTAGTGCTTCATGAGGAGGATTTTCAGGAATAGAA
JMSF026M16+ ATCATTCTATTATCTTGTGGTGCTGCTAGTGCTTCATGAGGAGGATTTTCAGGAATAGAA
                      ____________________________________________________________
consensus ATCATTCTATTATCTTGTGGTGCTGCTAGTGCTTCATGAGGAGGATTTTCAGGAATAGAA
 
. : . : . : . : . : . :
JMSF048D07+ GGCTGCACTCCTTCAACAGATAACCAATGAGATACTAATGCAGTATCTAATGGAGCTTTT
JMFF043N03+ GGCTGCACTCCTTCAACAGATAACCAATGAGATACTAATGCAGTATCTAATGGAGCTTTT
JMSF026M16+ GGCTGCACTCCTTCAACAGATAACCAATGAGATACTAATGCAGTATCTAATGGAGCTTTT
                      ____________________________________________________________
consensus GGCTGCACTCCTTCAACAGATAACCAATGAGATACTAATGCAGTATCTAATGGAGCTTTT
 
. : . : . : . : . : . :
JMSF048D07+ GGTAGAGGAGCTTCAATCACATCCTTGAAGTCTAAATCCTTCTCTTCAATGTAGAACAAA
JMFF043N03+ GGTAGAGGAGCTTCAATCACATCCTTGAAGTCTAAATCCTTCTCTTCAATGTAGAACAAA
JMSF026M16+ GGTAGAGGAGCTTCAATCACATCCTTGAAGTCTAAATCCTTCTCTTCAATGTAGAACAAA
                      ____________________________________________________________
consensus GGTAGAGGAGCTTCAATCACATCCTTGAAGTCTAAATCCTTCTCTTCAATGTAGAACAAA
 
. : . : . : . : . : . :
JMSF048D07+ TCCTTATGCCCCACAGCTC--TTGAACCGCATAGGATCTCCAGATGCAAATCCATATATT
JMFF043N03+ TCCTTATGCCCCACAGCTCTTTTGAACCGCATAGGATCTCCAGATGCAAATCCATATATT
JMSF026M16+ TCCTTATGCCCCACAGCTCTTTTGAACCGCATAGGATCTCCAGATGCAAATCCATATATT
                      ____________________________________________________________
consensus TCCTTATGCCCCACAGCTCTTTTGAACCGCATAGGATCTCCAGATGCAAATCCATATATT
 
. : . : . : . : . : . :
JMSF048D07+ GGCTCAACATTTCGTATGCTGAGCGCTGCATCCACATCCTCGGCAGTTAAGATTGTCCTC
JMFF043N03+ GGCTCAACATTTCGTATGCTGAGCGCTGCATCCACATCCTCGGCAGTTAAGATTGTCCTC
JMSF026M16+ GGCTCAACATTTCGTATGCTGAGCGCTGCATCCACATCCTCGGCAGTTAAGATTGTCCTC
                      ____________________________________________________________
consensus GGCTCAACATTTCGTATGCTGAGCGCTGCATCCACATCCTCGGCAGTTAAGATTGTCCTC
 
. : . : . : . : . : . :
JMSF048D07+ TTCGAATGTCTCGTGCATTTTATGGATTCCTGCATTATTTCTCGGAGACGGTATTCGACA
JMFF043N03+ TTCGAATGTCTCGTGCATTTTATGGATTCCTGCATTATTTCTCGGAGACGGTATTCGACA
JMSF026M16+ TTCGAATGTCTCGTGCATTTTATGGATTCCTGCATTATTTCTCGGAGACGGTATTCGACA
                      ____________________________________________________________
consensus TTCGAATGTCTCGTGCATTTTATGGATTCCTGCATTATTTCTCGGAGACGGTATTCGACA
 
. : . : . : . : . : . :
JMSF048D07+ TCGGCTGCAAGTTCCGGCGACACTTCCGGGGACAAATTGCTGATTCCGATGCTCTGCGCT
JMFF043N03+ TCGGCTGCAAGTTCCGGCGACACTTCCGGGGACAAATTGCTGATTCCGATGCTCTGCGCT
JMSF026M16+ TCGGCTGCAAGTTCCGGCGACACTTCCGGGGACAAATTGCTGATTCCGATGCTCTGCGCT
                      ____________________________________________________________
consensus TCGGCTGCAAGTTCCGGCGACACTTCCGGGGACAAATTGCTGATTCCGATGCTCTGCGCT
 
. : . : . : . : . : . :
JMSF048D07+ ATCACTTCTATTGTCTCTTTCGGCACTATGCTCATCTTTACACGGAAATTTTGCACTTTT
JMFF043N03+ ATCACTTCTATTGTCTCTTTCGGCACTATGCTCATCTTTACACGGAAATTTTGCACTTTT
JMSF026M16+ ATCACTTCTATTGTCTCTTTCGGCACTATGCTCATCTTTACACGGAAATTTTGCACTTTT
                      ____________________________________________________________
consensus ATCACTTCTATTGTCTCTTTCGGCACTATGCTCATCTTTACACGGAAATTTTGCACTTTT
 
. : . : . : . : . : . :
JMSF048D07+ TTGGTTGATTTTTCTTTCTTTTTTCCGGTTGAAACTAGCGGAGAATGAATTGGAGCTT
JMFF043N03+ TTGGTTGATTTTTCTTTCTTTTTTCCGGTTGAAACTAGCGGAGAATGAATTGGAGCTT
JMSF026M16+ TTGGTTGATTTTTCTTTCTTTTTTCCGGTTGAAACTAGCGGAGAATGAATTGGAGCTTCC
                      ____________________________________________________________
consensus TTGGTTGATTTTTCTTTCTTTTTTCCGGTTGAAACTAGCGGAGAATGAATTGGAGCTTCC