Contig 003686:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001M11Sequence217003686 (5)
JMSF013B23Sequence222003686 (5)719004339 (4)emb|CDX97868.1|7e-39BnaC04g40710D [Brassica napus]
JMSF024J08Sequence696003686 (5)ref|XP_010650926.1|123PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]747004339 (4)emb|CDX97868.1|3e-45BnaC04g40710D [Brassica napus]
JMSF026G16Sequence623003686 (5)ref|XP_010650926.1|117PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]803004339 (4)emb|CDX97868.1|1e-50BnaC04g40710D [Brassica napus]
JMSF039H19Sequence689003686 (5)ref|XP_010650926.1|122PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]842004339 (4)emb|CDY02002.1|3e-44BnaC04g14990D [Brassica napus]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF039H19+ CATGCCACCATTAGTACACTCATCACTGNTCCGG
JMSF024J08+ AACATGCCACCATTAGTACACTCATCANTGCTCCGG
                      ____________________________________________________________
consensus AACATGCCACCATTAGTACACTCATCACTGCTCCGG
 
. : . : . : . : . : . :
JMSF039H19+ CACGCTGCTTCACTGGAACCGGTCACGAATTCTTCTTCCTCACCATCGCTAGAGCTTGAA
JMSF026G16+ TCCTCACCATCGCTAGAGCTTGAA
JMSF024J08+ CACGCTGCTTCACTGGAACCGGTCACGAATTCTTCTTCCTCACCATCGCTAGAGCTTGAA
                      ____________________________________________________________
consensus CACGCTGCTTCACTGGAACCGGTCACGAATTCTTCTTCCTCACCATCGCTAGAGCTTGAA
 
. : . : . : . : . : . :
JMSF039H19+ TTTAAGGTTTCTTCATCATCCCATCGCTGGAAACTCAAAGCCAACTCTTCAATTCTCCTA
JMSF026G16+ TTTAAGGTTTCTTCATCATCCCATCGCTGGAAACTCAAAGCCAACTCTTCAATTCTCCTA
JMSF024J08+ TTTAAGGTTTCTTCATCATCCCATCGCTGGAAACTCAAAGCCAACTCTTCAATTCTCCTA
                      ____________________________________________________________
consensus TTTAAGGTTTCTTCATCATCCCATCGCTGGAAACTCAAAGCCAACTCTTCAATTCTCCTA
 
. : . : . : . : . : . :
JMSF039H19+ GTAAACTCCTCGTCCGAGAAAGAATCTTCTAGGCTGGCACTGCAAGCACGTCTTATGGTG
JMSF026G16+ GTAAACTCCTCGTCCGAGAAAGAATCTTCTAGGCTGGCACTGCAAGCACGTCTTATGGTG
JMSF024J08+ GTAAACTCCTCGTCCGAGAAAGAATCTTCTAGGCTGGCACTGCAAGCACGTCTTATGGTG
                      ____________________________________________________________
consensus GTAAACTCCTCGTCCGAGAAAGAATCTTCTAGGCTGGCACTGCAAGCACGTCTTATGGTG
 
. : . : . : . : . : . :
JMSF039H19+ GTTTGTGCGGGGGGCTTGAGAAACTCGCAGGATCGGGACCGGGAGAGCTTCGTCGTCGTC
JMSF026G16+ GTTTGTGCGGGGGGCTTGAGAAACTCGCAGGATCGGGACCGGGAGAGCTTCGTCGTCGTC
JMSF024J08+ GTTTGTGCGGGGGGCTTGAGAAACTCGCAGGATCGGGACCGGGAGAGCTTCGTCGTCGTC
                      ____________________________________________________________
consensus GTTTGTGCGGGGGGCTTGAGAAACTCGCAGGATCGGGACCGGGAGAGCTTCGTCGTCGTC
 
. : . : . : . : . : . :
JMSF039H19+ GGCGGGGCTCCGAGAAACGCCGATCTTTCCAACCTGTGCACGAACCGGCAAACCACAGAT
JMSF026G16+ GGCGGGGCTCCGAGAAACGCCGATCTTTCCAACCTGTGCACGAACCGGCAAACCACAGAT
JMSF024J08+ GGCGGGGCTCCGAGAAACGCCGATCTTTCCAACCTGTGCACGAACCGGCAAACCACAGAT
                      ____________________________________________________________
consensus GGCGGGGCTCCGAGAAACGCCGATCTTTCCAACCTGTGCACGAACCGGCAAACCACAGAT
 
. : . : . : . : . : . :
JMSF039H19+ CTTTCGCCGCTCACAAAACCGCGTCGTTTCGGGAGAGATGAAATCATTGCGGCATGGACG
JMSF026G16+ CTTTCGCCGCTCACAAAACCGCGTCGTTTCGGGAGAGATGAAATCATTGCGGCATGGACG
JMSF024J08+ CTTTCGCCGCTCACAAAACCGCGTCGTTTCGGGAGAGATGAAATCATTGCGGCATGGACG
                      ____________________________________________________________
consensus CTTTCGCCGCTCACAAAACCGCGTCGTTTCGGGAGAGATGAAATCATTGCGGCATGGACG
 
. : . : . : . : . : . :
JMSF039H19+ TGAGGATGAGGCGGCGAGTGTGGAACTGAATGTTGCGACCAATGCAAACACGTCGTCGCA
JMSF026G16+ TGAGGATGAGGCGGCGAGTGTGGAACTGAATGTTGCGACCAATGCAAACACGTCGTCGCA
JMSF024J08+ TGAGGATGAGGCGGCGAGTGTGGAACTGAATGTTGCGACCAATGCAAACACGTCGTCGCA
                      ____________________________________________________________
consensus TGAGGATGAGGCGGCGAGTGTGGAACTGAATGTTGCGACCAATGCAAACACGTCGTCGCA
 
. : . : . : . : . : . :
JMSF039H19+ ACTTTTACCCCCATTTTCCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
JMSF026G16+ ACTTTTACCCCCATTTTCCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
JMSF013B23+ CCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
JMSF001M11+ CGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
JMSF024J08+ ACTTTTACCCCCATTTTCCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
                      ____________________________________________________________
consensus ACTTTTACCCCCATTTTCCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
 
. : . : . : . : . : . :
JMSF039H19+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
JMSF026G16+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
JMSF013B23+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
JMSF001M11+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
JMSF024J08+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
                      ____________________________________________________________
consensus TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
 
. : . : . : . : . : . :
JMSF039H19+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
JMSF026G16+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
JMSF013B23+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
JMSF001M11+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
JMSF024J08+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
                      ____________________________________________________________
consensus GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
 
. : . : . : . : . : . :
JMSF039H19+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAA
JMSF026G16+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCC
JMSF013B23+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCC
JMSF001M11+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCC
JMSF024J08+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCCC
                      ____________________________________________________________
consensus AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCCC