Contig 003672:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS001D11Sequence489003672 (3)ref|XP_004235749.1|3e-57PREDICTED: ATP-dependent RNA helicase DHX36 [Solanum lycopersicum]
JMFS008F01Sequence228003672 (3)ref|XP_009797190.1|6e-32PREDICTED: ATP-dependent RNA helicase DHX36 [Nicotiana sylvestris]
JMSF023J18Sequence668003672 (3)ref|XP_009797190.1|2e-54PREDICTED: ATP-dependent RNA helicase DHX36 [Nicotiana sylvestris]662011382 (29)ref|XP_009622218.1|1e-57PREDICTED: pollen-specific protein C13-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS001D11+ ATCATCTTTTGACCTTCTAGAGACTCCTGCCAATTTTGTTG
                      ____________________________________________________________
consensus ATCATCTTTTGACCTTCTAGAGACTCCTGCCAATTTTGTTG
 
. : . : . : . : . : . :
JMFS001D11+ TTTATATTGCATGTCCAAGCTCCTCCGCTGAAGGATTCTCTCAGCAACGATATTTCGTGA
                      ____________________________________________________________
consensus TTTATATTGCATGTCCAAGCTCCTCCGCTGAAGGATTCTCTCAGCAACGATATTTCGTGA
 
. : . : . : . : . : . :
JMFS001D11+ AGGGGGCTTCTCATTCTCACAAAGTTCATTGTCATTTGAAAATTTCTGGCCATTGCTAGA
                      ____________________________________________________________
consensus AGGGGGCTTCTCATTCTCACAAAGTTCATTGTCATTTGAAAATTTCTGGCCATTGCTAGA
 
. : . : . : . : . : . :
JMFS001D11+ TCTTGAAAAGTAATTATATTCTGAGCTTGTGTTATTGATAGACTTTTTAGAACAGTATGC
                      ____________________________________________________________
consensus TCTTGAAAAGTAATTATATTCTGAGCTTGTGTTATTGATAGACTTTTTAGAACAGTATGC
 
. : . : . : . : . : . :
JMFS001D11+ TTTCAGAAGGGCATTTACACGATCTTGCAGTCCATGAGGTATGACCACCTCCCTCTGTGG
JMSF023J18+ CTCTGTGG
                      ____________________________________________________________
consensus TTTCAGAAGGGCATTTACACGATCTTGCAGTCCATGAGGTATGACCACCTCCCTCTGTGG
 
. : . : . : . : . : . :
JMFS001D11+ ACGCTTAGCATCCAGATCTGGTCTGTAGTTTGGTAATGGAACTTTACTAAAGACAACTAC
JMFS008F01+ GCATCCAGATCTGGTCTGTAGTTTGGTAATGGAACTTTACTAAAGACAACTAC
JMSF023J18+ ACGCTTAGCATCCAGATCTGGTCTGTAGTTTGGTAATGGAACTTTACTAAAGACAACTAC
                      ____________________________________________________________
consensus ACGCTTAGCATCCAGATCTGGTCTGTAGTTTGGTAATGGAACTTTACTAAAGACAACTAC
 
. : . : . : . : . : . :
JMFS001D11+ TTTATCAAATTGACAACAATGTAAACCCATTCTGGTTGCTAGTGTTGATAGATGCCCAAA
JMFS008F01+ TTTATCAAATTGACAACAATGTAAACCCATTCTGGTTGCTAGTGTTGATAGATGCCCAAA
JMSF023J18+ TTTATCAAATTGACAACAATGTAAACCCATTCTGGTTGCTAGTGTTGATAGATGCCCAAA
                      ____________________________________________________________
consensus TTTATCAAATTGACAACAATGTAAACCCATTCTGGTTGCTAGTGTTGATAGATGCCCAAA
 
. : . : . : . : . : . :
JMFS001D11+ ATCACGACGATCCTTTTTCTCTCTTGAGATCACTTCTTGTTCATTTTCATTACGCAATAG
JMFS008F01+ ATCACGACGATCCTTTTTCTCTCTTGAGATCACTTCTTGTTCATTTTCATTACGCAATAG
JMSF023J18+ ATCACGACGATCCTTTTTCTCTCTTGAGATCACTTCTTGTTCATTTTCATTACGCAATAG
                      ____________________________________________________________
consensus ATCACGACGATCCTTTTTCTCTCTTGAGATCACTTCTTGTTCATTTTCATTACGCAATAG
 
. : . : . : . : . : . :
JMFS001D11+ CATGG-TAACTTCCATCTCCACTCTTCAA
JMFS008F01+ CATGGTTAACTTCCATCTCCACTCTTCAATATTACCAAGAGTTGAATCATCCAAC
JMSF023J18+ CATGGTTAACTTCCATCTCCACTCTTCAATATTACCAAGAGTTGAATCATCCAACTGCTT
                      ____________________________________________________________
consensus CATGGTTAACTTCCATCTCCACTCTTCAATATTACCAAGAGTTGAATCATCCAACTGCTT
 
. : . : . : . : . : . :
JMSF023J18+ AGACTCGGGCTCAAATTCCCGATCAGACTCAGACTCTGAAGGGTACTCGGGGTACGCAAG
                      ____________________________________________________________
consensus AGACTCGGGCTCAAATTCCCGATCAGACTCAGACTCTGAAGGGTACTCGGGGTACGCAAG
 
. : . : . : . : . : . :
JMSF023J18+ CCGGCCAAACCCGAAATTCTGCTGATAAATATACGGCAAATTGAAAGGAGAGGACGCATT
                      ____________________________________________________________
consensus CCGGCCAAACCCGAAATTCTGCTGATAAATATACGGCAAATTGAAAGGAGAGGACGCATT
 
. : . : . : . : . : . :
JMSF023J18+ CCTGTTCCGCCTACGTATGATGGCTGCAGAGCAACAGAAGCCGAAGTTATGCAAGCGGTG
                      ____________________________________________________________
consensus CCTGTTCCGCCTACGTATGATGGCTGCAGAGCAACAGAAGCCGAAGTTATGCAAGCGGTG
 
. : . : . : . : . : . :
JMSF023J18+ GGGTGGCCTTGTGGTACGGAGAAGAATAGGGGATTTGTTTAAATGGAAGCGGCGGTAGAG
                      ____________________________________________________________
consensus GGGTGGCCTTGTGGTACGGAGAAGAATAGGGGATTTGTTTAAATGGAAGCGGCGGTAGAG
 
. : . : . : . : . : . :
JMSF023J18+ CTGAAGAGAGACGGAGGTAGTGGTGGCGGCGGCCATAAGTGGAATGGCCCTTGGCCTTAA
                      ____________________________________________________________
consensus CTGAAGAGAGACGGAGGTAGTGGTGGCGGCGGCCATAAGTGGAATGGCCCTTGGCCTTAA
 
. : . : . : . : . : . :
JMSF023J18+ TCTGCGGCAATTGTGTATAAGGTTAGAGTAGGCCATTGTTGAAATTTAGGAAGACATGGC
                      ____________________________________________________________
consensus TCTGCGGCAATTGTGTATAAGGTTAGAGTAGGCCATTGTTGAAATTTAGGAAGACATGGC
 
. : . : . : . : . : . :
JMSF023J18+ TGAATTTCTGTGGATAGGGTTTTGGCGAGCGAGGGGTTTTGGAGGAGGGAAACCTGGCCC
                      ____________________________________________________________
consensus TGAATTTCTGTGGATAGGGTTTTGGCGAGCGAGGGGTTTTGGAGGAGGGAAACCTGGCCC