Contig 003660:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002K24Sequence474003660 (4)588013655 (4)ref|XP_011073647.1|2e-08PREDICTED: protein SPT2 homolog isoform X3 [Sesamum indicum]
JMFS062B01Sequence630003660 (4)ref|XP_004234640.1|2e-20PREDICTED: protein SPT2 homolog isoform X1 [Solanum lycopersicum]
JMFS062D10Sequence606003660 (4)ref|XP_004234640.1|2e-17PREDICTED: protein SPT2 homolog isoform X1 [Solanum lycopersicum]
JMSF021G02Sequence664003660 (4)ref|XP_004234640.1|3e-23PREDICTED: protein SPT2 homolog isoform X1 [Solanum lycopersicum]777016092ref|XP_009781867.1|7e-20PREDICTED: protein SPT2 homolog [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF021G02+ TNGG
                      ____________________________________________________________
consensus TNGG
 
. : . : . : . : . : . :
JMFS062B01+ CATGGTTACTGGTACTGGACTTTGGTCTCGCAGAGTTCGAGGCATGAA
JMFS062D10+ GTCTCGCAGAGTTCGAGGCATGAA
JMSF021G02+ AAACTTTTGGTGCATGGTTACTGGTACTGGACTTTGGTCTCGCAGAGTTCGAGGCATGAA
                      ____________________________________________________________
consensus AAACTTTTGGTGCATGGTTACTGGTACTGGACTTTGGTCTCGCAGAGTTCGAGGCATGAA
 
. : . : . : . : . : . :
JMFS062B01+ CCTTATTACCACTAGCAATATTTTTCCTCATAACTTTATCTGCCAAATCAGGGTTCTCCA
JMFS062D10+ CCTTATTACCACTAGCAATATTTTTCCTCATAACTTTATCTGCCAAATCAGGGTTCTCCA
JMSF021G02+ CCTTATTACCACTAGCAATATTTTTCCTCATAACTTTATCTGCCAAATCAGGGTTCTCCA
                      ____________________________________________________________
consensus CCTTATTACCACTAGCAATATTTTTCCTCATAACTTTATCTGCCAAATCAGGGTTCTCCA
 
. : . : . : . : . : . :
JMFS062B01+ ATAAGGACTTGCTTTCTTGAATTACTCTTTGAGCTATAACTGGCTGTGATGGTCCAAAGA
JMFS062D10+ ATAAGGACTTGCTTTCTTGAATTACTCTTTGAGCTATAACTGGCTGTGATGGTCCAAAGA
JMSF021G02+ ATAAGGACTTGCTTTCTTGAATTACTCTTTGAGCTATAACTGGCTGTGATGGTCCAAAGA
                      ____________________________________________________________
consensus ATAAGGACTTGCTTTCTTGAATTACTCTTTGAGCTATAACTGGCTGTGATGGTCCAAAGA
 
. : . : . : . : . : . :
JMFS062B01+ AGGAACCAAAATTATCCTTGGATGAAGAACTCTTGATATTACGGGAACTGGAAGCACTTC
JMFS062D10+ AGGAACCAAAATTATCCTTGGATGAAGAACTCTTGATATTACGGGAACTGGAAGCACTTC
JMFF002K24+ CCAAAATTATCCNTGGATGAAGAACCCTTGATATTACGGGAACTGGAAGCACTTC
JMSF021G02+ AGGAACCAAAATTATCCTTGGATGAAGAACTCTTGATATTACGGGAACTGGAAGCACTTC
                      ____________________________________________________________
consensus AGGAACCAAAATTATCCTTGGATGAAGAACTCTTGATATTACGGGAACTGGAAGCACTTC
 
. : . : . : . : . : . :
JMFS062B01+ CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
JMFS062D10+ CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
JMFF002K24+ CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
JMSF021G02+ CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
                      ____________________________________________________________
consensus CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
 
. : . : . : . : . : . :
JMFS062B01+ CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
JMFS062D10+ CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
JMFF002K24+ CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
JMSF021G02+ CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
                      ____________________________________________________________
consensus CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
 
. : . : . : . : . : . :
JMFS062B01+ CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
JMFS062D10+ CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
JMFF002K24+ CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
JMSF021G02+ CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
                      ____________________________________________________________
consensus CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
 
. : . : . : . : . : . :
JMFS062B01+ ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
JMFS062D10+ ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
JMFF002K24+ ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
JMSF021G02+ ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
                      ____________________________________________________________
consensus ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
 
. : . : . : . : . : . :
JMFS062B01+ ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
JMFS062D10+ ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
JMFF002K24+ ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
JMSF021G02+ ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
                      ____________________________________________________________
consensus ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
 
. : . : . : . : . : . :
JMFS062B01+ GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
JMFS062D10+ GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
JMFF002K24+ GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
JMSF021G02+ GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
                      ____________________________________________________________
consensus GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
 
. : . : . : . : . : . :
JMFS062B01+ GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAG
JMFS062D10+ GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAG
JMFF002K24+ GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAGGGATGCGTTGAGAAAT
JMSF021G02+ GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAGGGATGCGTTGAGAAATTC
                      ____________________________________________________________
consensus GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAGGGATGCGTTGAGAAATTC