Contig 003639:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002B06Sequence269003639 (8)728007012 (8)
JMSF016B14Sequence456003639 (8)781007012 (8)
JMSF018D11Sequence515003639 (8)761007012 (8)
JMSF023M15Sequence611003639 (8)783007012 (8)
JMSF027N10Sequence621003639 (8)732007012 (8)
JMSF042J17Sequence801003639 (8)829007012 (8)
JMSF049B08Sequence640003639 (8)702007012 (8)
JMSF053M15Sequence267003639 (8)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042J17+ AAATATAAATCCATATGTAAA
                      ____________________________________________________________
consensus AAATATAAATCCATATGTAAA
 
. : . : . : . : . : . :
JMSF042J17+ TAATCTTAATACTATATCAGGATCAGCATTTTCATTACATATAAATCTAGGATATTTAGT
                      ____________________________________________________________
consensus TAATCTTAATACTATATCAGGATCAGCATTTTCATTACATATAAATCTAGGATATTTAGT
 
. : . : . : . : . : . :
JMSF042J17+ TATTTTTCTACTTCTTAATATTGTATTATCAGTTTTATAATCATAAAATTTATTAATAAT
                      ____________________________________________________________
consensus TATTTTTCTACTTCTTAATATTGTATTATCAGTTTTATAATCATAAAATTTATTAATAAT
 
. : . : . : . : . : . :
JMSF027N10+ ATCAGCCATACTAGTGGATGT
JMSF042J17+ TTCATACATTTCTATTAAATCTTCTGAATGTTTTAGCTTATCAGCCATACTAGTGGATGT
JMSF023M15+ GGATGT
JMSF049B08+ CTTCTGAATGTTTTAGCTTATCAGCCATACTAGNGGATGT
                      ____________________________________________________________
consensus TTCATACATTTCTATTAAATCTTCTGAATGTTTTAGCTTATCAGCCATACTAGTGGATGT
 
. : . : . : . : . : . :
JMSF027N10+ TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGTGTTTT
JMSF042J17+ TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGNGTTTT
JMSF023M15+ TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGTGTTTT
JMSF049B08+ TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGTGTTTT
                      ____________________________________________________________
consensus TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGTGTTTT
 
. : . : . : . : . : . :
JMSF027N10+ CAATTTTTTCATCCTCTTATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
JMSF042J17+ CAATTTTTTCATCCTCTTATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
JMSF023M15+ CAATTTTTTCATCCTCTCATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
JMSF049B08+ CAATTTTTTCATCCTCTTATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
JMSF018D11+ TCAAAGGTTTTTTCTAATCNTTCTATTCTTTTCCT
                      ____________________________________________________________
consensus CAATTTTTTCATCCTCTTATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
 
. : . : . : . : . : . :
JMSF027N10+ ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF042J17+ ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF023M15+ ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF049B08+ ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF016B14+ TTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF018D11+ ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
                      ____________________________________________________________
consensus ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
 
. : . : . : . : . : . :
JMSF027N10+ ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF042J17+ ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF023M15+ ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF049B08+ ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF016B14+ ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF018D11+ ATCAATTGNTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
                      ____________________________________________________________
consensus ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
 
. : . : . : . : . : . :
JMSF027N10+ ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF042J17+ ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF023M15+ ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF049B08+ ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF016B14+ ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF018D11+ ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
                      ____________________________________________________________
consensus ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
 
. : . : . : . : . : . :
JMSF027N10+ TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCGA
JMSF042J17+ TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF023M15+ TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF049B08+ TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF016B14+ TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF002B06+ TGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF053M15+ TGGTAGGTGTTTACAAGCTCGTCCCA
JMSF018D11+ TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
                      ____________________________________________________________
consensus TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
 
. : . : . : . : . : . :
JMSF027N10+ TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF042J17+ TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF023M15+ TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF049B08+ TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF016B14+ TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF002B06+ TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF053M15+ TTTCTCCAATCCGACCGATCNGAAGNGGTTTCCAGANTGTTAGGTATGATGANGAGTGAT
JMSF018D11+ TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
                      ____________________________________________________________
consensus TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
 
. : . : . : . : . : . :
JMSF027N10+ TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF042J17+ TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF023M15+ TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF049B08+ TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF016B14+ TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF002B06+ TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF053M15+ TGAAGGGGAAGGCTTCGAAGCCNGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF018D11+ TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
                      ____________________________________________________________
consensus TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
 
. : . : . : . : . : . :
JMSF027N10+ TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF042J17+ TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF023M15+ TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF049B08+ TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF016B14+ TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF002B06+ TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF053M15+ TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF018D11+ TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
                      ____________________________________________________________
consensus TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
 
. : . : . : . : . : . :
JMSF027N10+ GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCG
JMSF042J17+ GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCG
JMSF023M15+ GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGT
JMSF049B08+ GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC
JMSF016B14+ GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC
JMSF002B06+ GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC
JMSF053M15+ GACGGAATTTCTCTTTCAAAGATTTTTNTAACTCAAATAANGTTTGNGTCTNTGTGCGT
JMSF018D11+ GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC
                      ____________________________________________________________
consensus GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC