Contig 003634:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017J10Sequence511003634 (2)gb|AAV88066.1|1e-06NBS-LRR protein [Ipomoea batatas]687001336 (2)gb|AAL47004.1|AF448811_12e-89unknown [Davidia involucrata]
JMSF017K10Sequence552003634 (2)gb|AAV88066.1|1e-06NBS-LRR protein [Ipomoea batatas]122004235 (2)

Alignment

This contig is upended


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JMSF017K10+ AAAGCTCATACT
                      ____________________________________________________________
consensus AAAGCTCATACT
 
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JMSF017K10+ CCTCCTTCACTTTCACCAGCTCTTCTTTGATGGCATCAATGTCTTGTATTGCTTGTTGCA
                      ____________________________________________________________
consensus CCTCCTTCACTTTCACCAGCTCTTCTTTGATGGCATCAATGTCTTGTATTGCTTGTTGCA
 
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JMSF017K10+ ATATATAACCAAGTGACTGAGAAGGACAAGTTCTCTCCACTACATCATTATACTCCCTTG
                      ____________________________________________________________
consensus ATATATAACCAAGTGACTGAGAAGGACAAGTTCTCTCCACTACATCATTATACTCCCTTG
 
. : . : . : . : . : . :
JMSF017K10+ GATTTCCCTTTGGCGGATGAAAAATTCGGCAAAGCATTGAGCATCCCCGAGGACCCCAAG
                      ____________________________________________________________
consensus GATTTCCCTTTGGCGGATGAAAAATTCGGCAAAGCATTGAGCATCCCCGAGGACCCCAAG
 
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JMSF017K10+ TATCCCTTTCCTCTTCCTGATAAAGATGTACTACTTGGAGTTCAATTTCATCTTCTACTC
JMSF017J10+ AGATGTACTACTTGGAGTTCAATTTCATCTTCTACTC
                      ____________________________________________________________
consensus TATCCCTTTCCTCTTCCTGATAAAGATGTACTACTTGGAGTTCAATTTCATCTTCTACTC
 
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JMSF017K10+ TGAAAGCTACATCTCTGAGTCTGGTTTCCAAGATTTTAATTGCCTCCACACCATCCAT
JMSF017J10+ TGAAAGCTACATCTCTGAGTCTGGTTTCCAAGATTTTAATTGCCTCCACACCATCCATCC
                      ____________________________________________________________
consensus TGAAAGCTACATCTCTGAGTCTGGTTTCCAAGATTTTAATTGCCTCCACACCATCCATCC
 
. : . : . : . : . : . :
JMSF017J10+ TATTCTCATCAAATAACTCAATAAGAGATTGGAGCTTTCCATGGAGAGACTGGATCAACT
                      ____________________________________________________________
consensus TATTCTCATCAAATAACTCAATAAGAGATTGGAGCTTTCCATGGAGAGACTGGATCAACT
 
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JMSF017J10+ CTATGTTGCGAGGGATGAGTAGTTTATTTTGTTGTAGAATTGGACGAGGCAGAGGTTGCA
                      ____________________________________________________________
consensus CTATGTTGCGAGGGATGAGTAGTTTATTTTGTTGTAGAATTGGACGAGGCAGAGGTTGCA
 
. : . : . : . : . : . :
JMSF017J10+ AGAACTCAAGCTCTAGCGTCCTCATAAGAGAAAGTACAACCACACAGGCCATTCTTCTCT
                      ____________________________________________________________
consensus AGAACTCAAGCTCTAGCGTCCTCATAAGAGAAAGTACAACCACACAGGCCATTCTTCTCT
 
. : . : . : . : . : . :
JMSF017J10+ CACTGTCTCTAGCTAGCTCTGTGTAGGTGTAATGTAAATGAGAAAGAGAGTTGTTTAGCC
                      ____________________________________________________________
consensus CACTGTCTCTAGCTAGCTCTGTGTAGGTGTAATGTAAATGAGAAAGAGAGTTGTTTAGCC