Contig 003595:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS065D06Sequence624003595 (5)ref|XP_009612912.1|1e-107PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian
JMFS142A07Sequence622003595 (5)ref|XP_009612912.1|1e-104PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian
JMSF012J13Sequence510003595 (5)emb|CAN82944.1|3e-73hypothetical protein VITISV_027872 [Vitis vinifera]
JMSF031D04Sequence611003595 (5)ref|XP_009612912.1|1e-97PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian732010010 (2)ref|XP_006369613.1|2e-86hypothetical protein POPTR_0001s269802g [Populus trichocarpa] gb|ERP66182.1| hyp
JMSF032H09Sequence674003595 (5)ref|XP_009612912.1|6e-111PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian687010010 (2)ref|XP_006369613.1|6e-100hypothetical protein POPTR_0001s269802g [Populus trichocarpa] gb|ERP66182.1| hyp

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF032H09+ CTCTTAGTAATAAGTGA
                      ____________________________________________________________
consensus CTCTTAGTAATAAGTGA
 
. : . : . : . : . : . :
JMFS065D06+ TGACAGGCAACCGAGGATCACCCACAGCTTTTTCGGTCTCTTCAAGAAGTTG
JMFS142A07+ CGAGGATCACCCACAGCTTTTTCGGTCTCTTCAAGAAGTTG
JMSF032H09+ ACTATGCATGACAGGCAACCGAGGATCACCCACAGCTTTTTCGGTCTCTTCAAGAAGTTG
JMSF031D04+ TCTTCAAGAAGTTG
                      ____________________________________________________________
consensus ACTATGCATGACAGGCAACCGAGGATCACCCACAGCTTTTTCGGTCTCTTCAAGAAGTTG
 
. : . : . : . : . : . :
JMFS065D06+ AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
JMFS142A07+ AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
JMSF032H09+ AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
JMSF031D04+ AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
                      ____________________________________________________________
consensus AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
 
. : . : . : . : . : . :
JMFS065D06+ GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
JMFS142A07+ GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
JMSF032H09+ GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
JMSF031D04+ GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
JMSF012J13+ TTCAAGTACATGCTTTTTGGGCACAACTTT
                      ____________________________________________________________
consensus GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
 
. : . : . : . : . : . :
JMFS065D06+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
JMFS142A07+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
JMSF032H09+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
JMSF031D04+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
JMSF012J13+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
                      ____________________________________________________________
consensus CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
 
. : . : . : . : . : . :
JMFS065D06+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
JMFS142A07+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
JMSF032H09+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
JMSF031D04+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
JMSF012J13+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
                      ____________________________________________________________
consensus CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
 
. : . : . : . : . : . :
JMFS065D06+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
JMFS142A07+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
JMSF032H09+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
JMSF031D04+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
JMSF012J13+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
                      ____________________________________________________________
consensus TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
 
. : . : . : . : . : . :
JMFS065D06+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
JMFS142A07+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
JMSF032H09+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
JMSF031D04+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
JMSF012J13+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
                      ____________________________________________________________
consensus TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
 
. : . : . : . : . : . :
JMFS065D06+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
JMFS142A07+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
JMSF032H09+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
JMSF031D04+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
JMSF012J13+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
                      ____________________________________________________________
consensus CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
 
. : . : . : . : . : . :
JMFS065D06+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
JMFS142A07+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
JMSF032H09+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
JMSF031D04+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
JMSF012J13+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
                      ____________________________________________________________
consensus AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
 
. : . : . : . : . : . :
JMFS065D06+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
JMFS142A07+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
JMSF032H09+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
JMSF031D04+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
JMSF012J13+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
                      ____________________________________________________________
consensus GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
 
. : . : . : . : . : . :
JMFS065D06+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGT
JMFS142A07+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAG
JMSF032H09+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAGTGTGAGCAAACTTT
JMSF031D04+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAGTGTGAGCAAACTTT
JMSF012J13+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAGTGTGAGCAAACTTTTGGCC
                      ____________________________________________________________
consensus ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAGTGTGAGCAAACTTTTGGCC