Contig 003582:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035J01Sequence560003582 (5)emb|CDP19325.1|5e-66unnamed protein product [Coffea canephora]698001150 (4)ref|XP_006345040.1|1e-65PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
JMFS074D08Sequence626003582 (5)emb|CDP19325.1|1e-79unnamed protein product [Coffea canephora]
JMFS078G05Sequence617003582 (5)emb|CDP19325.1|7e-78unnamed protein product [Coffea canephora]
JMSF010N11Sequence170003582 (5)769001150 (4)ref|XP_009623301.1|1e-90PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana tomentosiformis]
JMSF013H05Sequence537003582 (5)emb|CDP19325.1|2e-63unnamed protein product [Coffea canephora]774001150 (4)ref|XP_009796585.1|4e-84PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS078G05+ TCTTCTTTGCAGATATGGTACCTGTCACTGGAGAACTTTGATGCAACATCTTT
JMFS074D08+ AAAATCTTCTTTGCAGATATGGTACCTGTCACTGGAGAACTTTGATGCAACATCTTT
                      ____________________________________________________________
consensus AAAATCTTCTTTGCAGATATGGTACCTGTCACTGGAGAACTTTGATGCAACATCTTT
 
. : . : . : . : . : . :
JMFS078G05+ TCCAGAAACTTTCCGGTATATCTTTGGGGCAAATTTAAGCTTGAACAGGACTGCATCGTG
JMFS074D08+ TCCAGAAACTTTCCGGTATATCTTTGGGGCAAATTTAAGCTTGAACAGGACTGCATCGTG
JMFF035J01+ GGGGCAAATTTAAGCTTGAACAGGACTGCATCGTG
                      ____________________________________________________________
consensus TCCAGAAACTTTCCGGTATATCTTTGGGGCAAATTTAAGCTTGAACAGGACTGCATCGTG
 
. : . : . : . : . : . :
JMFS078G05+ GTCCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
JMFS074D08+ GTCCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
JMFF035J01+ GTCCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
JMSF013H05+ CCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
                      ____________________________________________________________
consensus GTCCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
 
. : . : . : . : . : . :
JMFS078G05+ GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
JMFS074D08+ GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
JMFF035J01+ GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
JMSF013H05+ GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
                      ____________________________________________________________
consensus GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
 
. : . : . : . : . : . :
JMFS078G05+ CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
JMFS074D08+ CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
JMFF035J01+ CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
JMSF013H05+ CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
                      ____________________________________________________________
consensus CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
 
. : . : . : . : . : . :
JMFS078G05+ CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
JMFS074D08+ CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
JMFF035J01+ CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
JMSF013H05+ CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
                      ____________________________________________________________
consensus CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
 
. : . : . : . : . : . :
JMFS078G05+ GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
JMFS074D08+ GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
JMFF035J01+ GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
JMSF013H05+ GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
                      ____________________________________________________________
consensus GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
 
. : . : . : . : . : . :
JMFS078G05+ TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
JMFS074D08+ TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
JMFF035J01+ TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
JMSF013H05+ TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
                      ____________________________________________________________
consensus TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
 
. : . : . : . : . : . :
JMFS078G05+ GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
JMFS074D08+ GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
JMFF035J01+ GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
JMSF013H05+ GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
                      ____________________________________________________________
consensus GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
 
. : . : . : . : . : . :
JMFS078G05+ CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
JMFS074D08+ CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
JMFF035J01+ CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
JMSF013H05+ CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
JMSF010N11+ GCGTACTCGAGGAAGGCGAGGANCTCATTGGCTATGGCGCTTTGGGGAAT
                      ____________________________________________________________
consensus CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
 
. : . : . : . : . : . :
JMFS078G05+ GTGAGTCACCCTCACACTTGCTGT
JMFS074D08+ GTGAGTCACCCTCACACTTGCTGT
JMFF035J01+ GTGAGTCACCCTCACACTTGCTGTGATTCTCTCCTCCATGCCCAT
JMSF013H05+ GTGAGTCACCCTCACACTTGCTGTGATTCTCTCCTCCATGCCCATAAATTGAGATAGTC
JMSF010N11+ GTGAGTCACCNTCACACNNGCTGTGATTCTCTCCTCCATGCCCATAAATTGAGATAGTGG
                      ____________________________________________________________
consensus GTGAGTCACCCTCACACTTGCTGTGATTCTCTCCTCCATGCCCATAAATTGAGATAGTGG
 
. : . : . : . : . : . :
JMSF010N11+ GACTGGGGACCTGGGAGGGTTTTACTTTTATGCCTTAGCTTTTGCCTTTNGAGGTTTTCC
                      ____________________________________________________________
consensus GACTGGGGACCTGGGAGGGTTTTACTTTTATGCCTTAGCTTTTGCCTTTNGAGGTTTTCC