Contig 003576:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010H10Sequence446003576 (2)gb|KDO70006.1|2e-61hypothetical protein CISIN_1g0068982mg, partial [Citrus sinensis] gb|KDO70007.1|725006267 (3)ref|XP_010102837.1|1e-95Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isofor
JMSF017E20Sequence251003576 (2)emb|CDP00596.1|3e-15unnamed protein product [Coffea canephora]714006267 (3)ref|XP_010102837.1|8e-104Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isofor

Alignment

This contig is upended


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JMSF010H10+                                             TCACACAGGTCTCCTCCACTGAGCAA
                      ____________________________________________________________
consensus                                               TCACACAGGTCTCCTCCACTGAGCAA
 
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JMSF010H10+           AGTGTCTCTAAGGGCGGGAGCAACACATGAGCATGCTCCACACCTCCAACATAAGGAATA
                      ____________________________________________________________
consensus             AGTGTCTCTAAGGGCGGGAGCAACACATGAGCATGCTCCACACCTCCAACATAAGGAATA
 
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JMSF010H10+           AACACAGCTAACTCTTCTGCCATTGCAAGCAACACCTCATCATCGTCATCATTGTTCTCA
                      ____________________________________________________________
consensus             AACACAGCTAACTCTTCTGCCATTGCAAGCAACACCTCATCATCGTCATCATTGTTCTCA
 
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JMSF017E20+                                                        GCACGTGCTATAGTA
JMSF010H10+           CTCAGGAATGGGATTAACTCCTTCCGAGTTCTTTCCTCCCCAAGTGCACGTGCTATAGTA
                      ____________________________________________________________
consensus             CTCAGGAATGGGATTAACTCCTTCCGAGTTCTTTCCTCCCCAAGTGCACGTGCTATAGTA
 
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JMSF017E20+           GATAGCCTCCGGACAGAATTCAACCGCAGTTGAATGTCATCATTCTTTAGCTCCTCTATC
JMSF010H10+           GATAGCCTCCGGACAGAATTCAACCGCAGTTGAATGTCATCATTCTTTAGCTCCTCTATC
                      ____________________________________________________________
consensus             GATAGCCTCCGGACAGAATTCAACCGCAGTTGAATGTCATCATTCTTTAGCTCCTCTATC
 
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JMSF017E20+           AACACAGCTATTGGGTACAGTGGCTCGACAGCCATTGCCATTGTGTCGTCAAAATTTACT
JMSF010H10+           AACACAGCTATTGGGTACAGTGGCTCGTCAGCCATTGCCATTGTGTCGTCAAAATTTACT
                      ____________________________________________________________
consensus             AACACAGCTATTGGGTACAGTGGCTCGTCAGCCATTGCCATTGTGTCGTCAAAATTTACT
 
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JMSF017E20+           CGCAGCGGAGGAAATGAGCTCCCGCCAGCCGGCGCCTGAGATTCGAAGTTGTCGTTGTTT
JMSF010H10+           CGCAGCGGAGGAAATGAGCTCCCGCCAGCCGGCGCCTGAGATTCGAAGTTGTCGTTGTTT
                      ____________________________________________________________
consensus             CGCAGCGGAGGAAATGAGCTCCCGCCAGCCGGCGCCTGAGATTCGAAGTTGTCGTTGTTT
 
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JMSF017E20+           CTTTCGCCGGAGATACAAAGAGAATGTGTTGAATAGGTCGTGGTATTTTGAAT       
JMSF010H10+           CTTTCGCCGGAGATACAAAGAGAATGTGTTGAATAGGTCGTGGTATTTTGAATTCCGTCC
                      ____________________________________________________________
consensus             CTTTCGCCGGAGATACAAAGAGAATGTGTTGAATAGGTCGTGGTATTTTGAATTCCGTCC