Contig 003574:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS163D10Sequence624003574 (4)ref|XP_009773757.1|2e-85PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.
JMSF010F17Sequence464003574 (4)ref|XP_009597738.1|7e-16PREDICTED: poly(A) RNA polymerase, mitochondrial [Nicotiana tomentosiformis] ref744003018 (3)ref|XP_009773757.1|1e-48PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.
JMSF023G01Sequence668003574 (4)ref|XP_009773757.1|4e-62PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.723003018 (3)ref|XP_009773757.1|5e-42PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.
JMSF052F14Sequence682003574 (4)ref|XP_009773757.1|2e-68PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.899003018 (3)ref|XP_009773757.1|3e-47PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS163D10+ CCTTGACCAGTAAAACCATGTGACGAAAACGCCCATCAATTGTACTGATC
                      ____________________________________________________________
consensus CCTTGACCAGTAAAACCATGTGACGAAAACGCCCATCAATTGTACTGATC
 
. : . : . : . : . : . :
JMFS163D10+ CAGTATAGCAATTTGGACTTCATTTGTCCGCTCAAATTATTTATTGATATGTCACAGGAG
JMSF052F14+ TCCGCTCAAATTATTTATTGATATGTCACAGGAG
JMSF023G01+ CACAGGAG
                      ____________________________________________________________
consensus CAGTATAGCAATTTGGACTTCATTTGTCCGCTCAAATTATTTATTGATATGTCACAGGAG
 
. : . : . : . : . : . :
JMFS163D10+ ATGTTATACTTGCCCTGAAACTTCAATATAGGGACTCTTGCATTGGTAATAAATCTCAAT
JMSF052F14+ ATGTTATACTTGCCCTGAAACTTCAATATAGGGACTCTTGCATTGGTAATAAATCTCAAT
JMSF023G01+ ATGTTATACTTGCCCTGAAACTTCAATATAGGGACTCTTGCATTGGTAATAAATCTCAAT
                      ____________________________________________________________
consensus ATGTTATACTTGCCCTGAAACTTCAATATAGGGACTCTTGCATTGGTAATAAATCTCAAT
 
. : . : . : . : . : . :
JMFS163D10+ TTCCGATAGCCACCTTTCATTTCCAATGCTTTTAGTACATCTTCAAGTAAATTTTGTTTG
JMSF052F14+ TTCCGATAGCCACCTTTCATTTCCAATGCTTTTAGTACATCTTCAAGTAAATTTTGTTTG
JMSF023G01+ TTCCGATAGCCACCTTTCATTTCCAATGCTTTTAGTACATCTTCAAGTAAATTTTGTTTG
                      ____________________________________________________________
consensus TTCCGATAGCCACCTTTCATTTCCAATGCTTTTAGTACATCTTCAAGTAAATTTTGTTTG
 
. : . : . : . : . : . :
JMFS163D10+ TGCTTCTTCCCAGCACTTGCGATATAGGAACCATTGGCCAACTCTATTGATATATCAAGA
JMSF052F14+ TGCTTCTTCCCAGCACTTGCGATATAGGAACCATTGGCCAACTCTATTGATATATCAAGA
JMSF023G01+ TGCTTCTTCCCAGCACTTGCGATATAGGAACCATTGGCCAACTCTATTGATATATCAAGA
                      ____________________________________________________________
consensus TGCTTCTTCCCAGCACTTGCGATATAGGAACCATTGGCCAACTCTATTGATATATCAAGA
 
. : . : . : . : . : . :
JMFS163D10+ TCTCCACACCTTGTGAAGAGATCAGATACAAAAGATCCAAATGGCTCAACCGTTGCACCT
JMSF052F14+ TCTCCACACCTTGTGAAGAGATCAGATACAAAAGATCCAAATGGCTCAACCGTTGCACCT
JMSF023G01+ TCTCCACACCTTGTGAAGAGATCAGATACAAAAGATCCAAATGGCTCAACCGTTGCACCT
JMSF010F17+ CT
                      ____________________________________________________________
consensus TCTCCACACCTTGTGAAGAGATCAGATACAAAAGATCCAAATGGCTCAACCGTTGCACCT
 
. : . : . : . : . : . :
JMFS163D10+ CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
JMSF052F14+ CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
JMSF023G01+ CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
JMSF010F17+ CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
                      ____________________________________________________________
consensus CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
 
. : . : . : . : . : . :
JMFS163D10+ GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
JMSF052F14+ GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
JMSF023G01+ GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
JMSF010F17+ GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
                      ____________________________________________________________
consensus GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
 
. : . : . : . : . : . :
JMFS163D10+ GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
JMSF052F14+ GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
JMSF023G01+ GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
JMSF010F17+ GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
                      ____________________________________________________________
consensus GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
 
. : . : . : . : . : . :
JMFS163D10+ ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
JMSF052F14+ ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
JMSF023G01+ ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
JMSF010F17+ ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
                      ____________________________________________________________
consensus ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
 
. : . : . : . : . : . :
JMFS163D10+ AAAATCGAATCGCCAACGGAGAAAATGAAATCT
JMSF052F14+ AAAATCGAATCGCCAACGGAGAAAATGAAATCTTTTCGAGAAAATACCGGCCGGCGGAAT
JMSF023G01+ AAAATCGAATCGCCAACGGAGAAAATGAAATCTTTTCGAGAAAATACCGGCCGGCGGAAT
JMSF010F17+ AAAATCGAATCGCCAACGGAGAAAATGAAATCTTTTCGAGAAAATACCGGCCGGCGGAAT
                      ____________________________________________________________
consensus AAAATCGAATCGCCAACGGAGAAAATGAAATCTTTTCGAGAAAATACCGGCCGGCGGAAT
 
. : . : . : . : . : . :
JMSF052F14+ AGTCAGTAGAAACGAATCACCGGAGCAGCCAGACTAAAGGGCGGCTCTGATGAGAATTAG
JMSF023G01+ AGTCAGTAGAAACGAATCACCGGAGCAGCCAGACTAAAGGGCGGCTCTGATGAGAATTAG
JMSF010F17+ AGTCAGTAGAAACGAATCACCGGAGCAGCCAGACTAAAGGGCGGCTCTGATGAGAATTAG
                      ____________________________________________________________
consensus AGTCAGTAGAAACGAATCACCGGAGCAGCCAGACTAAAGGGCGGCTCTGATGAGAATTAG
 
. : . : . : . : . : . :
JMSF052F14+ GGCTTTTGTCTCTCAGCATCACTGCCCAGTAGCGCTAGACATTACAC
JMSF023G01+ GGCTTTTGTCTCTCAGCATCACTGCCCAGTAGCGCTAGACATTACACGGAAATTTCTGTC
JMSF010F17+ GGCTTTTGTCTCTCAGCATCACTGCCCAGTAGCGCTAGACATTACACGGAAATTTCTGTC
                      ____________________________________________________________
consensus GGCTTTTGTCTCTCAGCATCACTGCCCAGTAGCGCTAGACATTACACGGAAATTTCTGTC