clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS163D10 | Sequence | 624 | 003574 (4) | ref|XP_009773757.1| | 2e-85 | PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758. | |||||
JMSF010F17 | Sequence | 464 | 003574 (4) | ref|XP_009597738.1| | 7e-16 | PREDICTED: poly(A) RNA polymerase, mitochondrial [Nicotiana tomentosiformis] ref | 744 | 003018 (3) | ref|XP_009773757.1| | 1e-48 | PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758. |
JMSF023G01 | Sequence | 668 | 003574 (4) | ref|XP_009773757.1| | 4e-62 | PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758. | 723 | 003018 (3) | ref|XP_009773757.1| | 5e-42 | PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758. |
JMSF052F14 | Sequence | 682 | 003574 (4) | ref|XP_009773757.1| | 2e-68 | PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758. | 899 | 003018 (3) | ref|XP_009773757.1| | 3e-47 | PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758. |
This contig is upended
. : . : . : . : . : . :
JMFS163D10+ CCTTGACCAGTAAAACCATGTGACGAAAACGCCCATCAATTGTACTGATC
____________________________________________________________
consensus CCTTGACCAGTAAAACCATGTGACGAAAACGCCCATCAATTGTACTGATC
. : . : . : . : . : . :
JMFS163D10+ CAGTATAGCAATTTGGACTTCATTTGTCCGCTCAAATTATTTATTGATATGTCACAGGAG
JMSF052F14+ TCCGCTCAAATTATTTATTGATATGTCACAGGAG
JMSF023G01+ CACAGGAG
____________________________________________________________
consensus CAGTATAGCAATTTGGACTTCATTTGTCCGCTCAAATTATTTATTGATATGTCACAGGAG
. : . : . : . : . : . :
JMFS163D10+ ATGTTATACTTGCCCTGAAACTTCAATATAGGGACTCTTGCATTGGTAATAAATCTCAAT
JMSF052F14+ ATGTTATACTTGCCCTGAAACTTCAATATAGGGACTCTTGCATTGGTAATAAATCTCAAT
JMSF023G01+ ATGTTATACTTGCCCTGAAACTTCAATATAGGGACTCTTGCATTGGTAATAAATCTCAAT
____________________________________________________________
consensus ATGTTATACTTGCCCTGAAACTTCAATATAGGGACTCTTGCATTGGTAATAAATCTCAAT
. : . : . : . : . : . :
JMFS163D10+ TTCCGATAGCCACCTTTCATTTCCAATGCTTTTAGTACATCTTCAAGTAAATTTTGTTTG
JMSF052F14+ TTCCGATAGCCACCTTTCATTTCCAATGCTTTTAGTACATCTTCAAGTAAATTTTGTTTG
JMSF023G01+ TTCCGATAGCCACCTTTCATTTCCAATGCTTTTAGTACATCTTCAAGTAAATTTTGTTTG
____________________________________________________________
consensus TTCCGATAGCCACCTTTCATTTCCAATGCTTTTAGTACATCTTCAAGTAAATTTTGTTTG
. : . : . : . : . : . :
JMFS163D10+ TGCTTCTTCCCAGCACTTGCGATATAGGAACCATTGGCCAACTCTATTGATATATCAAGA
JMSF052F14+ TGCTTCTTCCCAGCACTTGCGATATAGGAACCATTGGCCAACTCTATTGATATATCAAGA
JMSF023G01+ TGCTTCTTCCCAGCACTTGCGATATAGGAACCATTGGCCAACTCTATTGATATATCAAGA
____________________________________________________________
consensus TGCTTCTTCCCAGCACTTGCGATATAGGAACCATTGGCCAACTCTATTGATATATCAAGA
. : . : . : . : . : . :
JMFS163D10+ TCTCCACACCTTGTGAAGAGATCAGATACAAAAGATCCAAATGGCTCAACCGTTGCACCT
JMSF052F14+ TCTCCACACCTTGTGAAGAGATCAGATACAAAAGATCCAAATGGCTCAACCGTTGCACCT
JMSF023G01+ TCTCCACACCTTGTGAAGAGATCAGATACAAAAGATCCAAATGGCTCAACCGTTGCACCT
JMSF010F17+ CT
____________________________________________________________
consensus TCTCCACACCTTGTGAAGAGATCAGATACAAAAGATCCAAATGGCTCAACCGTTGCACCT
. : . : . : . : . : . :
JMFS163D10+ CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
JMSF052F14+ CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
JMSF023G01+ CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
JMSF010F17+ CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
____________________________________________________________
consensus CTCAAACTTTCTATGGGTTCCACAACGGCTCGTAGTTCTTCAATTAATTGAAATCTTATA
. : . : . : . : . : . :
JMFS163D10+ GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
JMSF052F14+ GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
JMSF023G01+ GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
JMSF010F17+ GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
____________________________________________________________
consensus GACCAGTCATCTTTTGAGGGACTGATTGCGCAAATAATGTAGCGGAGTGTATGCTCTAAT
. : . : . : . : . : . :
JMFS163D10+ GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
JMSF052F14+ GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
JMSF023G01+ GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
JMSF010F17+ GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
____________________________________________________________
consensus GGGCTATAGCCATTCATTCTGAGCACTGAATTTTCTTTCCAACAGAGAGATTATTTGCCA
. : . : . : . : . : . :
JMFS163D10+ ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
JMSF052F14+ ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
JMSF023G01+ ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
JMSF010F17+ ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
____________________________________________________________
consensus ATTCTCAACTGGAAAAAGAATTACCATAATTGGTTGCCCATAGCTCCGAAAGCCAAATCC
. : . : . : . : . : . :
JMFS163D10+ AAAATCGAATCGCCAACGGAGAAAATGAAATCT
JMSF052F14+ AAAATCGAATCGCCAACGGAGAAAATGAAATCTTTTCGAGAAAATACCGGCCGGCGGAAT
JMSF023G01+ AAAATCGAATCGCCAACGGAGAAAATGAAATCTTTTCGAGAAAATACCGGCCGGCGGAAT
JMSF010F17+ AAAATCGAATCGCCAACGGAGAAAATGAAATCTTTTCGAGAAAATACCGGCCGGCGGAAT
____________________________________________________________
consensus AAAATCGAATCGCCAACGGAGAAAATGAAATCTTTTCGAGAAAATACCGGCCGGCGGAAT
. : . : . : . : . : . :
JMSF052F14+ AGTCAGTAGAAACGAATCACCGGAGCAGCCAGACTAAAGGGCGGCTCTGATGAGAATTAG
JMSF023G01+ AGTCAGTAGAAACGAATCACCGGAGCAGCCAGACTAAAGGGCGGCTCTGATGAGAATTAG
JMSF010F17+ AGTCAGTAGAAACGAATCACCGGAGCAGCCAGACTAAAGGGCGGCTCTGATGAGAATTAG
____________________________________________________________
consensus AGTCAGTAGAAACGAATCACCGGAGCAGCCAGACTAAAGGGCGGCTCTGATGAGAATTAG
. : . : . : . : . : . :
JMSF052F14+ GGCTTTTGTCTCTCAGCATCACTGCCCAGTAGCGCTAGACATTACAC
JMSF023G01+ GGCTTTTGTCTCTCAGCATCACTGCCCAGTAGCGCTAGACATTACACGGAAATTTCTGTC
JMSF010F17+ GGCTTTTGTCTCTCAGCATCACTGCCCAGTAGCGCTAGACATTACACGGAAATTTCTGTC
____________________________________________________________
consensus GGCTTTTGTCTCTCAGCATCACTGCCCAGTAGCGCTAGACATTACACGGAAATTTCTGTC