Contig 003571:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003L14Sequence499003571 (4)gb|AID55340.1|2e-271-deoxy-D-xylulose 5-phosphate reductoisomerase [Actinidia arguta]751005864 (3)gb|KJB37089.1|2e-117hypothetical protein B456_006G189200 [Gossypium raimondii]
JMFF020E02Sequence567003571 (4)ref|XP_004298943.1|1e-59PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [Frag
JMFS043D09Sequence601003571 (4)ref|NP_001234553.1|2041-deoxy-D-xylulose-5-phosphate reductoisomerase [Solanum lycopersicum] gb|AAK960
JMSF009K13Sequence404003571 (4)ref|XP_011016464.1|1e-07PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 714005864 (3)gb|KJB37089.1|9e-121hypothetical protein B456_006G189200 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF020E02+ ATTTCAGGTTTGTCTTCC
JMFS043D09+ AGGTTTGTCTTCC
                      ____________________________________________________________
consensus ATTTCAGGTTTGTCTTCC
 
. : . : . : . : . : . :
JMFF020E02+ AGACCAGACAAAGCTTCTTTGAGTTCTTCAACCAATGATTCATGTTGAACAGAAACTAAC
JMFS043D09+ AGACCAGACAAAGCTTCTTTGAGTTCTTCAACCAATGATTCATGTTGAACAGAAACTAAC
                      ____________________________________________________________
consensus AGACCAGACAAAGCTTCTTTGAGTTCTTCAACCAATGATTCATGTTGAACAGAAACTAAC
 
. : . : . : . : . : . :
JMFF020E02+ TTTGGTCTGAATGTTTTGACCTGGTCAGCAAGAAGAGCCACATTTGACCCAGCTGCAAGT
JMFS043D09+ TTTGGTCTGAATGTTTTGACCTGGTCAGCAAGAAGAGCCACATTTGACCCAGCTGCAAGT
                      ____________________________________________________________
consensus TTTGGTCTGAATGTTTTGACCTGGTCAGCAAGAAGAGCCACATTTGACCCAGCTGCAAGT
 
. : . : . : . : . : . :
JMFF020E02+ GCAACAACTCTAAATTTGTCTGGATTCTCCGCAACTATATCCAGCGTCTGAGTTCCAATA
JMFS043D09+ GCAACAACTCTAAATTTGTCTGGATTCTCCGCAACTATATCCAGCGTCTGAGTTCCAATA
JMFF003L14+ TCCGCAACTATATCCAGCGTCTGAGTTCCAATA
                      ____________________________________________________________
consensus GCAACAACTCTAAATTTGTCTGGATTCTCCGCAACTATATCCAGCGTCTGAGTTCCAATA
 
. : . : . : . : . : . :
JMFF020E02+ GAACCAGTCGACCCGAGAATTGAAATAGGCTTTGGACCATCCCAACTCTTTTGGCTTGGT
JMFS043D09+ GAACCAGTCGACCCGAGAATTGAAATAGGCTTTGGACCATCCCAACTCTTTTGGCTTGGT
JMFF003L14+ GAACCAGTCGACCCGAGAATTGAAATAGGCTTTGGACCATCCCAACTCTTTTGGCTTGGT
                      ____________________________________________________________
consensus GAACCAGTCGACCCGAGAATTGAAATAGGCTTTGGACCATCCCAACTCTTTTGGCTTGGT
 
. : . : . : . : . : . :
JMFF020E02+ TCAACCACAGCCCTTCCTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATTGAT
JMFS043D09+ TCAACCACAGCCCTTCCTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATTGAT
JMFF003L14+ TCAACCACAGCCCTTCCTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATAGAT
JMSF009K13+ CTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATTGAT
                      ____________________________________________________________
consensus TCAACCACAGCCCTTCCTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATTGAT
 
. : . : . : . : . : . :
JMFF020E02+ CTCTTTGCAAATTTTCAACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
JMFS043D09+ CTCTTTGCAAATTTTCCACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
JMFF003L14+ CTCTTTGCAAATTTTCCACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
JMSF009K13+ CTCTTTGCAAATTTTCCACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
                      ____________________________________________________________
consensus CTCTTTGCAAATTTTCCACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
 
. : . : . : . : . : . :
JMFF020E02+ AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
JMFS043D09+ AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
JMFF003L14+ AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
JMSF009K13+ AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
                      ____________________________________________________________
consensus AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
 
. : . : . : . : . : . :
JMFF020E02+ AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
JMFS043D09+ AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
JMFF003L14+ AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
JMSF009K13+ AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
                      ____________________________________________________________
consensus AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
 
. : . : . : . : . : . :
JMFF020E02+ CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
JMFS043D09+ CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
JMFF003L14+ CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
JMSF009K13+ CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
                      ____________________________________________________________
consensus CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
 
. : . : . : . : . : . :
JMFF020E02+ AATAACGAC
JMFS043D09+ AATAACGACAAGCCAAGAGTAAAGGAGCTAGAACTAGAAGAAATGC
JMFF003L14+ AATAACGACAAGCCAAGAGTAAAGGAGCTAGAACTAGAAGAAATGCATATTTAGTATGAG
JMSF009K13+ AATAACGACAAGCCAAGAGTAAAGGAGCTAGAACTAGAAGAAATGCATATTTAGTATGAG
                      ____________________________________________________________
consensus AATAACGACAAGCCAAGAGTAAAGGAGCTAGAACTAGAAGAAATGCATATTTAGTATGAG
 
. : . : . : . : . : . :
JMFF003L14+ TTTGTGAGAAACGTGAGTGTGTGATTATCGTTTTTGAGAGTGAGAG
JMSF009K13+ TTTGTGAGAAACGTGAGTGTGTGATTATCGTTTTTGAGAGTGAGAGGAAAGGTGGAACCC
                      ____________________________________________________________
consensus TTTGTGAGAAACGTGAGTGTGTGATTATCGTTTTTGAGAGTGAGAGGAAAGGTGGAACCC