Contig 003558:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007J08Sequence331003558 (3)ref|XP_009774804.1|8e-33PREDICTED: plant intracellular Ras-group-related LRR protein 9-like [Nicotiana 763001360 (3)ref|XP_009797807.1|1e-67PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana
JMSF022N17Sequence620003558 (3)ref|XP_009797807.1|4e-65PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana 743001360 (3)ref|XP_009797807.1|1e-61PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana
JMSF023N17Sequence597003558 (3)ref|XP_009797807.1|2e-61PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana 672001360 (3)ref|XP_009797807.1|1e-57PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana

Alignment

This contig is upended


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JMSF022N17+                            ATTCTTCCAGCGCTATGGCGGACACATCACCTCCGGCGAGAGC
JMSF023N17+                                                    CATCACTTCCGNCGAGAGC
                      ____________________________________________________________
consensus                              ATTCTTCCAGCGCTATGGCGGACACATCACTTCCGGCGAGAGC
 
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JMSF022N17+           CACCGCGTAAATTTTCTCCAACCTTTTCTCCGCCTCTTTCAACAGCACAGCGTAGGACTT
JMSF023N17+           CACCGCGTAAATTTTCTCCAACCTTTTCTCCGCCTCTTTCAACAGCACAGCGTAGGACTT
                      ____________________________________________________________
consensus             CACCGCGTAAATTTTCTCCAACCTTTTCTCCGCCTCTTTCAACAGCACAGCGTAGGACTT
 
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JMSF022N17+           ATGCGCGTCCTCCAACGCAATAACCGTCTTGTGAAATTCCTTCTCCTTCTCCGCCTCCTT
JMSF023N17+           ATGCGCGTCCTCCAACGCAATAACCGTCTTGTGAAATTCCTTCTCNTTCTCCGCCTCCTT
                      ____________________________________________________________
consensus             ATGCGCGTCCTCCAACGCAATAACCGTCTTGTGAAATTCCTTCTCCTTCTCCGCCTCCTT
 
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JMSF022N17+           CCTGCACTCGGCCTCCTTCTCCGCCTGCTTCGACCTCCACACCTGCGGATCCACCTCCGG
JMSF023N17+           CATGCACTCGGCCTCCTTCTCCGCATGCTTCGACCTCCACACCTGCGGATCCACCTCCGG
                      ____________________________________________________________
consensus             CCTGCACTCGGCCTCCTTCTCCGCCTGCTTCGACCTCCACACCTGCGGATCCACCTCCGG
 
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JMSF022N17+           CGGCCGCGGCGCCAGCACAATCTCCTCCAGCTTCTTAGCCAGGGAAGCATCGATCCCCGT
JMSF023N17+           CGGCCGCGGCGCCAGCACAATCTCCTCCAGCTTCTTAGCCAGGGAAGCATCGATCCCCGT
                      ____________________________________________________________
consensus             CGGCCGCGGCGCCAGCACAATCTCCTCCAGCTTCTTAGCCAGGGAAGCATCGATCCCCGT
 
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JMSF022N17+           GAGCTTCATCTTTGCAGTGTCCACCGCCTCGTGATCCGGTTGTTCGCCTAGGGATTTGAG
JMSF023N17+           GAGCTTCATCTTTGCAGTGTCCACCGCCTCGTGATCCGGTTGTTCGCCTAGGGATTTGAG
JMSF007J08+                                        CGTGATCCGGTTGTTCGCCTAGGGATTTGAG
                      ____________________________________________________________
consensus             GAGCTTCATCTTTGCAGTGTCCACCGCCTCGTGATCCGGTTGTTCGCCTAGGGATTTGAG
 
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JMSF022N17+           CATAGATCGCGCCTGCGATACGTCGGCGACGGCGAGCCGCATGGCAGCAGCAACCTTCGG
JMSF023N17+           CATAGATCGCGCCTGCGATACGTCGGCGACGGCGAGCCGCATGGCAGCAGCAACCTTCGG
JMSF007J08+           CATAGATCGCGCCTGCGATACGTCGGCGACGGCGAGCCGCATGGCAGCAGCAACCTTCGG
                      ____________________________________________________________
consensus             CATAGATCGCGCCTGCGATACGTCGGCGACGGCGAGCCGCATGGCAGCAGCAACCTTCGG
 
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JMSF022N17+           ATCGGTGAGGTGGGGCATCCGCTCGGTGAGCTCGAAATAAGGCTCCTGCGCCTGCGGCGA
JMSF023N17+           ATCGGTGAGGTGGGGCATCCGCTCGGTGAGCTCGAAATAAGGCTCCTGCGCCTGCGGCGA
JMSF007J08+           ATCGGTGAGGTGGGGCATCCGCTCGGTGAGCTCGAAATAAGGCTCCTGCGCCTGCGGCGA
                      ____________________________________________________________
consensus             ATCGGTGAGGTGGGGCATCCGCTCGGTGAGCTCGAAATAAGGCTCCTGCGCCTGCGGCGA
 
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JMSF022N17+           CCTCGGCTTCGGTTGCTCGACGTCAAATTCATCCTCTCCGGCAGCGCGTCGGGGGACGAT
JMSF023N17+           CCTCGGCTTCGGTTGCTCGACGTCAAATTCATCCTCTCCGGCAGCGCGTCGGGGGACGAT
JMSF007J08+           CCTCGGCTTCGGTTGCTCGACGTCAAATTCATCCTCTCCGGCAGCGCGTCGGGGGACGAT
                      ____________________________________________________________
consensus             CCTCGGCTTCGGTTGCTCGACGTCAAATTCATCCTCTCCGGCAGCGCGTCGGGGGACGAT
 
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JMSF022N17+           GCTCGGGACTTTGGACATTACGAAGGAGAGAATCGGATAGTTATTAGGGTTTGGATCCAT
JMSF023N17+           GCTCGGGACTTTGGACATTACGAAGGAGAGAATCGGATAGTTATTAGGGTTTGGATCCAT
JMSF007J08+           GCTCGGGACTTTGGACATTACGAAGGAGAGAATCGGATAGTTATTAGGGTTTGGATCCAT
                      ____________________________________________________________
consensus             GCTCGGGACTTTGGACATTACGAAGGAGAGAATCGGATAGTTATTAGGGTTTGGATCCAT
 
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JMSF022N17+           TTCTCCGGCAGTGATTTCGTGAAA                                    
JMSF023N17+           TTCTCCGGCAGTGATTTCGTGAAA                                    
JMSF007J08+           TTCTCCGGCAGTGATTTCGTGAAACGCTGATCGTCTGGTTTCGGTTGGAAGTGTAAATCC
                      ____________________________________________________________
consensus             TTCTCCGGCAGTGATTTCGTGAAACGCTGATCGTCTGGTTTCGGTTGGAAGTGTAAATCC