Contig 003550:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020G14Sequence538003550 (8)804023340gb|KJB35043.1|4e-37hypothetical protein B456_006G096900 [Gossypium raimondii] gb|KJB35044.1| hypoth
JMFS026A01Sequence621003550 (8)
JMFS142C01Sequence625003550 (8)ref|XP_006343037.1|2e-09PREDICTED: RNA polymerase II-associated factor 1 homolog [Solanum tuberosum]
JMSF002B13Sequence267003550 (8)784017048gb|KJB35043.1|7e-52hypothetical protein B456_006G096900 [Gossypium raimondii] gb|KJB35044.1| hypoth
JMSF003K05Sequence430003550 (8)720007021 (3)emb|CDO97975.1|3e-89unnamed protein product [Coffea canephora]
JMSF006K06Sequence382003550 (8)518007021 (3)emb|CDO97975.1|7e-48unnamed protein product [Coffea canephora]
JMSF035E14Sequence662003550 (8)748017213emb|CDO97975.1|5e-102unnamed protein product [Coffea canephora]
JMSF048J24Sequence654003550 (8)730007021 (3)emb|CDO97975.1|2e-91unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS142C01+ ATGGAACCATGAC
                      ____________________________________________________________
consensus ATGGAACCATGAC
 
. : . : . : . : . : . :
JMFS142C01+ CCTTCACTCCAGAAGTTAACATTTGGGTCTTCTGCAGCACCTTGTTCTGGGATTCTTTTA
                      ____________________________________________________________
consensus CCTTCACTCCAGAAGTTAACATTTGGGTCTTCTGCAGCACCTTGTTCTGGGATTCTTTTA
 
. : . : . : . : . : . :
JMFS142C01+ AATGATGCCTATGTTTCTCTTCATGCCTTTGTTTCTCATACTCTCTCTTCTTCCGCAACC
                      ____________________________________________________________
consensus AATGATGCCTATGTTTCTCTTCATGCCTTTGTTTCTCATACTCTCTCTTCTTCCGCAACC
 
. : . : . : . : . : . :
JMFS142C01+ TCCTCTCTTCCTCTGTCTCAACTCTTCCAGAAGGAGCATTCGGTTTCTTCACTGGCATGG
                      ____________________________________________________________
consensus TCCTCTCTTCCTCTGTCTCAACTCTTCCAGAAGGAGCATTCGGTTTCTTCACTGGCATGG
 
. : . : . : . : . : . :
JMFS142C01+ GAGGAACAGGAGGTTTCTGCTTAGAGGGTATCCCGTGATTCCCATGCCCTGATTCTCGCC
                      ____________________________________________________________
consensus GAGGAACAGGAGGTTTCTGCTTAGAGGGTATCCCGTGATTCCCATGCCCTGATTCTCGCC
 
. : . : . : . : . : . :
JMFS142C01+ ACCCAGAATCCCTTCCATCCTTGGGAGCTGCTTTCTCAGCGGCAGGCCTGCTTTCATTAC
                      ____________________________________________________________
consensus ACCCAGAATCCCTTCCATCCTTGGGAGCTGCTTTCTCAGCGGCAGGCCTGCTTTCATTAC
 
. : . : . : . : . : . :
JMFS142C01+ TTGGATGCGCTGGGGGGGCTGATGAAGGGGGTGGTGGGGGTGAAGAAGGTGGCGGAGGAG
                      ____________________________________________________________
consensus TTGGATGCGCTGGGGGGGCTGATGAAGGGGGTGGTGGGGGTGAAGAAGGTGGCGGAGGAG
 
. : . : . : . : . : . :
JMFS142C01+ GAGGAATTGCTGAATTTGGGGGAGGAGAAGAAGGTGGAGGAGGTGGGGGTGGCGGTTGTA
JMSF035E14+ GAGGAGGTGGGGGTGGCGGTTGTA
JMSF048J24+ GTA
                      ____________________________________________________________
consensus GAGGAATTGCTGAATTTGGGGGAGGAGAAGAAGGTGGAGGAGGTGGGGGTGGCGGTTGTA
 
. : . : . : . : . : . :
JMFS142C01+ AATGCTGGTGTTGGTTGTATTGCGAGTATTGAGAAGAAGGATAATACACTGGAGCTGGGG
JMSF035E14+ AATGCTGGTGTTGGTTGTATTGCGAGTATTGAGAAGAAGGATAATACACTGGAGCTGGGG
JMSF048J24+ AATGCTGGTGTTGGTTGTATTGCGAGTATTGAGAAGAAGGATAATACACTGGAGCTGGGG
                      ____________________________________________________________
consensus AATGCTGGTGTTGGTTGTATTGCGAGTATTGAGAAGAAGGATAATACACTGGAGCTGGGG
 
. : . : . : . : . : . :
JMFS142C01+ GAGCAGCTTGCGGTGGCGGTGGTGGAGGAGGGTACGAAGAATCCGGCGGAGGCGGGGGTG
JMSF035E14+ GAGCAGCTTGCGGTGGCGGTGGTGGAGGAGGGTACGAAGAATCCGGCGGAGGCGGGGGTG
JMFF020G14+ AGGCGGGGGTG
JMSF048J24+ GAGCAGCTTGCGGTGGCGGTGGTGGAGGAGGGTACGAAGAATCCGGCGGAGGCGGGGGTG
                      ____________________________________________________________
consensus GAGCAGCTTGCGGTGGCGGTGGTGGAGGAGGGTACGAAGAATCCGGCGGAGGCGGGGGTG
 
. : . : . : . : . : . :
JMFS142C01+ GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
JMSF035E14+ GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
JMFF020G14+ GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
JMSF048J24+ GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
JMFS026A01+ CAGCGGAACATGATTCCTCGGCGGAAGAGGGC
                      ____________________________________________________________
consensus GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
 
. : . : . : . : . : . :
JMFS142C01+ CGCTAAAATGCG
JMSF035E14+ CGCTAAAATGCGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
JMFF020G14+ CGNTAAAATGCGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
JMSF048J24+ CGCTAAAATGCGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
JMFS026A01+ CGCTAAAATGAGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
                      ____________________________________________________________
consensus CGCTAAAATGCGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
 
. : . : . : . : . : . :
JMSF035E14+ TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
JMFF020G14+ TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
JMSF048J24+ TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
JMFS026A01+ TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
                      ____________________________________________________________
consensus TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
 
. : . : . : . : . : . :
JMSF035E14+ GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
JMFF020G14+ GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
JMSF048J24+ GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
JMFS026A01+ GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
                      ____________________________________________________________
consensus GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
 
. : . : . : . : . : . :
JMSF035E14+ TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
JMFF020G14+ TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
JMSF048J24+ TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
JMFS026A01+ TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
JMSF003K05+ CACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
                      ____________________________________________________________
consensus TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
 
. : . : . : . : . : . :
JMSF035E14+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMFF020G14+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMSF048J24+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMFS026A01+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMSF003K05+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMSF006K06+ TATTCAACTTGCAATCCCAATC
                      ____________________________________________________________
consensus AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
 
. : . : . : . : . : . :
JMSF035E14+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMFF020G14+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMSF048J24+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMFS026A01+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMSF003K05+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMSF002B13+ AACGAGCAAACCC
JMSF006K06+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
                      ____________________________________________________________
consensus TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
 
. : . : . : . : . : . :
JMSF035E14+ TCGACAAAT
JMFF020G14+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMSF048J24+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMFS026A01+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMSF003K05+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMSF002B13+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMSF006K06+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
                      ____________________________________________________________
consensus TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
 
. : . : . : . : . : . :
JMFF020G14+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACC
JMSF048J24+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTC
JMFS026A01+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
JMSF003K05+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
JMSF002B13+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
JMSF006K06+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
                      ____________________________________________________________
consensus AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
 
. : . : . : . : . : . :
JMFS026A01+ GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
JMSF003K05+ GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
JMSF002B13+ GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
JMSF006K06+ GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
                      ____________________________________________________________
consensus GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
 
. : . : . : . : . : . :
JMFS026A01+ TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGC
JMSF003K05+ TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGCGAGCAGATAGT
JMSF002B13+ TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGCGAGCAGATAGT
JMSF006K06+ TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGCGAGCAGATAGT
                      ____________________________________________________________
consensus TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGCGAGCAGATAGT
 
. : . : . : . : . : . :
JMSF003K05+ TTAAGCAGCGGAT
JMSF002B13+ TTAAGCAGCGGAT
JMSF006K06+ TTAAGCAGCGGATAACGACGACGATGAAGAGATGCCCTCATAAGTAAAGCAGCAGCCATC
                      ____________________________________________________________
consensus TTAAGCAGCGGATAACGACGACGATGAAGAGATGCCCTCATAAGTAAAGCAGCAGCCATC