Contig 003540:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013M04Sequence593003540 (11)ref|XP_006353230.1|1e-79PREDICTED: membrane-associated protein VIPP1, chloroplastic-like [Solanum tuber
JMFF046L06Sequence456003540 (11)ref|XP_009627205.1|7e-46PREDICTED: membrane-associated protein VIPP1, chloroplastic-like isoform X1 [Ni404003540 (11)
JMSF004N14Sequence325011851 (25)ref|XP_009129893.1|2e-06PREDICTED: topless-related protein 3 [Brassica rapa]370003540 (11)ref|XP_006353230.1|2e-11PREDICTED: membrane-associated protein VIPP1, chloroplastic-like [Solanum tuber
JMSF004P16Sequence197003540 (11)326001442 (5)
JMSF005M06Sequence343003540 (11)
JMSF005M08Sequence233003715 (4)ref|XP_009783013.1|4e-09PREDICTED: protein DEHYDRATION-INDUCED 19-like isoform X2 [Nicotiana sylvestris508003540 (11)ref|XP_006353230.1|4e-33PREDICTED: membrane-associated protein VIPP1, chloroplastic-like [Solanum tuber
JMSF018M10Sequence487003540 (11)ref|XP_009627205.1|3e-37PREDICTED: membrane-associated protein VIPP1, chloroplastic-like isoform X1 [Ni778003540 (11)ref|XP_006353230.1|1e-94PREDICTED: membrane-associated protein VIPP1, chloroplastic-like [Solanum tuber
JMSF037E02Sequence579003540 (11)ref|XP_009627205.1|3e-61PREDICTED: membrane-associated protein VIPP1, chloroplastic-like isoform X1 [Ni691003540 (11)ref|XP_006353230.1|2e-80PREDICTED: membrane-associated protein VIPP1, chloroplastic-like [Solanum tuber

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L06-                                    AATACATAAAGTACATTATTCTAATTCATAAAAT
                      ____________________________________________________________
consensus                                       AATACATAAAGTACATTATTCTAATTCATAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L06-          TCAACGATATCATTTTGGACAATAGTCCACACAGCTGAAATTTGCTGCCACAGCTTTTAG
                      ____________________________________________________________
consensus             TCAACGATATCATTTTGGACAATAGTCCACACAGCTGAAATTTGCTGCCACAGCTTTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L06-          GTTCAATCCCTCGTTATTCCATCACCTCATCAGATGTAAAAGCAAATGTAAGAACAGGGT
                      ____________________________________________________________
consensus             GTTCAATCCCTCGTTATTCCATCACCTCATCAGATGTAAAAGCAAATGTAAGAACAGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L06-          AAAACAAAACCTCACCAACACAGACAAGTTTGAATTATCTGATTCTAGTTGAAGGTGATC
rJMSF004N14-                                                              AGGTGATC
                      ____________________________________________________________
consensus             AAAACAAAACCTCACCAACACAGACAAGTTTGAATTATCTGATTCTAGTTGAAGGTGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L06-          CATTTCATTTACAAATTACAACACTACAATAACCCATAAGGACTTCCAGGCTGCACTTGT
rJMSF004N14-          CATTTCATTTACAAATTACAACACTACAATAACCCATAAGGACTTCCAGGCTGCACTTGT
rJMSF037E02-                                       TAACCCATAAGGACTTCCAGGCTGCACTTGT
rJMSF005M08-                           ACAACACTACAATAACCCGNAAGGACTTCCAGGCTGCACTTGT
rJMSF018M10-                           ACAACACTACAATAACCCATAAGGACTTCCAGGCTGCACTTGT
                      ____________________________________________________________
consensus             CATTTCATTTACAAATTACAACACTACAATAACCCATAAGGACTTCCAGGCTGCACTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L06-          ATCCATATACAAAGTGAAAAAAAGAAACAATAAGATTATAATTTGACCATACGAGGCAGG
rJMSF004N14-          ATCCATATACAAAGTGAAAAAAAGAAACAATAAGATTATAATTTGACCATACGAGGCAGG
rJMSF037E02-          ATCCATATACAAAGTGAAAAAAAGAAACAATAAGATTATAATTTGACCATACGAGGCAGG
rJMSF005M08-          ATCCATATACAAAGTGNAAAANAGAAACAATAAGATTATAATTTGACCATNCGAGGCAGG
rJMSF018M10-          ATCCATATACAAAGTGAAAAAAAGAAACAATAAGATTATAATTTGACCATACGAGGCAGG
                      ____________________________________________________________
consensus             ATCCATATACAAAGTGAAAAAAAGAAACAATAAGATTATAATTTGACCATACGAGGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L06-          ATCAACATTTTGTTTATGCTTTTGCCTCTTCATATGGCAATTCTTTGTTGCACATAAACT
rJMSF004N14-          ATCAACATTTTGTTTATGCTTTTGCCTCTTCATATGGCAATTCTTTGTTGCACATAAACT
rJMSF037E02-          ATCAACATTTTGTTTATGCTTTTGCCTCTTCATATGGCAATTCTTTGTTGCACATAAACT
rJMSF005M08-          ATCAACATTTTGTTTATGCTTTTGCCTCTTCATATGGCAANTCTTTGTTGCACATAANCT
rJMSF018M10-          ATCAACATTTTGTTTATGCTTTTGCCTCTTCATATGGCAATTCTTTGTTGCACATAAACT
                      ____________________________________________________________
consensus             ATCAACATTTTGTTTATGCTTTTGCCTCTTCATATGGCAATTCTTTGTTGCACATAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L06-          ATCTCTGGCA                                                  
rJMSF004N14-          ATCTCTGGCAGTGTAAGAGTCTGAAAAATGATTCAAGATCACCCGTGATCCCTATAGATC
rJMSF037E02-          ATCTCTGGCAGTGTAAGAGTCTGAAAAATGATTCAAGATCACCCGTGATCCCTATAGATC
rJMSF005M08-          ATCTCTGGCAGTGTAAGAGTCTGAAAAATGATTCAAGATCACCCGTGATCCCTATAGATC
rJMSF018M10-          ATCTCTGGCAGTGTAAGAGTCTGAAAAATGATTCAAGATCACCCGTGATCCCTATAGATC
                      ____________________________________________________________
consensus             ATCTCTGGCAGTGTAAGAGTCTGAAAAATGATTCAAGATCACCCGTGATCCCTATAGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004N14-          GTTGGCCCTCCTCCGTAATTCATTCAGTTCTTTCTCAATCTCTGCATCTTGAAACTGCAG
rJMSF037E02-          GTTGGCCCTCCTCCGTAATTCATTCAGTTCTTTCTCAATCTCTGCATCTTGAAACTGCAG
rJMSF005M08-          GTTGGCCCTCCTCCGTAATTCATTCAGTTCTTTCTCAATCTCTGCATCTTGAAACTGCAG
rJMSF018M10-          GTTGGCCCTCCTCCGTAATTCATTCAGTTCTTTCTCAATCTCTGCATCTTGAAACTGCAG
                      ____________________________________________________________
consensus             GTTGGCCCTCCTCCGTAATTCATTCAGTTCTTTCTCAATCTCTGCATCTTGAAACTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004N14-          CGAGCCCGTTCTAGCAACGGGCGTTCTGCCCGGGGGAAGCTCACCTTTC           
rJMSF037E02-          CGAGCCCGTTCTAGCAACGGGCGTTCTGCCCGGTGGAAGCTCACCTTTCTTGGAGCTTCC
rJMSF005M08-          CGAGCCCGTTCTAGCAACGGGCGTTCTGCCCGGTGGAAGCTCACCTTTCTTGGAGCTTCC
rJMSF018M10-          CGAGCCCGTTCTAGCAACGGGCGTTCTGCCCGGTGGAAGCTCACCTTTCTTGGAGCTTCC
                      ____________________________________________________________
consensus             CGAGCCCGTTCTAGCAACGGGCGTTCTGCCCGGTGGAAGCTCACCTTTCTTGGAGCTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E02-          GGACAATTCTTTCTTTAGATCAGCAAGATCACTGTCAACAGAAGAGCTCTCCAACAATGC
rJMSF005M08-          GGACAATTCTTTCTTTAGATCAGCAAGATCACTGTCAACAGAAGAGCTCTCCAACAATGC
rJMSF018M10-          GGACAATTCTTTCTTTAGATCAGCAAGATCACTGTCAACAGAAGAGCTCTCCAACAATGC
                      ____________________________________________________________
consensus             GGACAATTCTTTCTTTAGATCAGCAAGATCACTGTCAACAGAAGAGCTCTCCAACAATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E02-          AAACTTTCCTTCGAGCTCATCACTTGTTAGTTGGTTAAGAGCATCTGCTTGAGACTCCAT
rJMSF005M08-          AAACTTTCCTTCGAGCTCATCACTTGTTAGTTGGTTAAGAGCATCTGCTTGAGACTCCAT
rJMSF018M10-          AAACTTTCCTTCGAGCTCATCACTTGTTAGTTGGTTAAGAGCATCTGCTTGAGACTCCAT
                      ____________________________________________________________
consensus             AAACTTTCCTTCGAGCTCATCACTTGTTAGTTGGTTAAGAGCATCTGCTTGAGACTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E02-          GGCCAGGACTTTTTCCTCCATTCTTTCAAAGGCTGAAAGGGCACTGCTTGTATTCACATT
rJMSF005M08-          GGCCAGGACTTTTTCCTCCATTCTTTCAA                               
rJMSF018M10-          GGCCAGGACTTTTTCCTCCATTCTTTCAAAGGCTGAAAGGGCACTGCTTGTATTCACATT
                      ____________________________________________________________
consensus             GGCCAGGACTTTTTCCTCCATTCTTTCAAAGGCTGAAAGGGCACTGCTTGTATTCACATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E02-          TCCCAGCATCTCAGATACTTTGGTTGCAGTCTTAGCAGACTGAGCACGTGCTTTTAATGT
rJMSF018M10-          TCCCAGCATCTCAGATACTTTGGTTGCAGTCTTAGCAGACTGAGCACGTGCTTTTAATGT
                      ____________________________________________________________
consensus             TCCCAGCATCTCAGATACTTTGGTTGCAGTCTTAGCAGACTGAGCACGTGCTTTTAATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E02-          ATCCTTTTTTGATTTTGCTTCCTGTCTCTTGCTCTCTAAAAGCCGTGTATTGCTGATCAG
rJMSF018M10-          ATCCTTTTTTGATTTTGCTTCCTGTATCTTGCTCTCTAAAAGCCGTGTATTGCTGATCAG
                      ____________________________________________________________
consensus             ATCCTTTTTTGATTTTGCTTCCTGTCTCTTGCTCTCTAAAAGCCGTGTATTGCTGATCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E02-          ATTCTCAACCACACCCTTCTGCTGATCAAGCTGAGCCTTCAATGCATTTGCATTATCAGC
rJMSF018M10-          ATTCTCAACCACACCCTTCTGCTGATCAAGCTGAGCCTTCAATGCATTTGCATTATCAGC
JMFF013M04+                                                TTCAATGCATTTGCATTATCAGC
                      ____________________________________________________________
consensus             ATTCTCAACCACACCCTTCTGCTGATCAAGCTGAGCCTTCAATGCATTTGCATTATCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018M10-          ATAAGATTTTCTACGTTTCAAAGCTTCACGTGCAAGATCCTCATCTCCCTTT        
JMFF013M04+           ATAAGATTTTCTACGTTTCAGAGCTTCACGTGCAAGATCCTCATCTCCCTTTCCAAGAGC
JMSF037E02+                                                             TTCCAAGAGC
                      ____________________________________________________________
consensus             ATAAGATTTTCTACGTTTCAGAGCTTCACGTGCAAGATCCTCATCTCCCTTTCCAAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+                                                            TATTTGTTTTC
JMFF013M04+           AAGCTGTGCTCTACGATACCAGTCCTCAGAAGCTTGTTGTGCAGCTTTGTATTTGTTTTC
JMSF037E02+           AAGCTGTGCTCTACGATACCAGTCCTCAGAAGCTTGTTGTGCAGCTTTGTATTTGTTTTC
                      ____________________________________________________________
consensus             AAGCTGTGCTCTACGATACCAGTCCTCAGAAGCTTGTTGTGCAGCTTTGTATTTGTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+           CAACTGCTTCTGTGAAGCCAAGACCTGTGCTGTAGCTTGGCGCATTTTGATCAAATCATT
JMFF013M04+           CAACTGCTTCTGTGAAGCCAAGACCTGTGCTGTAGCTTGGCGCATTTTGATCAAATCATT
JMSF018M10+                                 ACCTGTGCTGTAGCTTGGCGCATTTTGATCAAATCATT
JMSF037E02+           CAACTGCTTCTGTGAAGCCAAGACCTGTGCTGTAGCTTGGCGCATTTTGATCAAATCATT
                      ____________________________________________________________
consensus             CAACTGCTTCTGTGAAGCCAAGACCTGTGCTGTAGCTTGGCGCATTTTGATCAAATCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+           GTTCATTTCTAGCACAGTTTGCTCCAGGATCTTCTCTGGGTCTTCAAAGGAACTAATGAC
JMFF013M04+           GTTCATTTCTAGCACAGTTTGCTCCAGGATCTTCTCTGGGTCTTCAAAGGAACTAATGAC
JMSF018M10+           GTTCATTTCTAGCACAGTTTGCTCCAGGATCTTCTCTGGGTCTTCAAAGGAACTAATGAC
JMSF037E02+           GTTCATTTCTAGCACAGTTTGCTCCAGGATCTTCTCTGGGTCTTCAAAGGAACTAATGAC
                      ____________________________________________________________
consensus             GTTCATTTCTAGCACAGTTTGCTCCAGGATCTTCTCTGGGTCTTCAAAGGAACTAATGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+           GGCATTAGCATAAGACTTGACTACTCTGGCAAATCTGTCAAAGAGATTACTGCGAACAAC
JMFF013M04+           GGCATTAGCATAAGACTTGACTACTCTGGCAAATCTGTCAAAGAGATTACTGCGAACAAC
JMSF018M10+           GGCATTAGCATAAGACTTGACTACTCTGGCAAATCTGTCAAAGAGATTACTGCGAACAAC
JMSF037E02+           GGCATTAGCATAAGACTTGACTACTCTGGCAAATCTGTCAAAGAGATTACTGCGAACAAC
                      ____________________________________________________________
consensus             GGCATTAGCATAAGACTTGACTACTCTGGCAAATCTGTCAAAGAGATTACTGCGAACAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+           AAGGGCACCAGAGGTGAATCTGTTGGAATGAGGACGCTGTCCAACTGCAACTGCAAGTTT
JMFF013M04+           AAGGGCACCAGAGGTGAATCTGTTGGAATGAGGACGCTGTCCAACTGCAACTGCAAGTTT
JMSF018M10+           AAGGGCACCAGAGGTGAATCTGTTGGAATGAGGACGCTGTCCAACTGCAACTGCAAGTTT
JMSF037E02+           AAGGGCACCAGAGGTGAATCTGTTGGAATGAGGACGCTGTCCAACTGCAACTGCAAGTTT
JMSF005M06+                            ATCTGTTGGAATGAGGACGCTGTCCAACTGCAACTGCAAGTTT
                      ____________________________________________________________
consensus             AAGGGCACCAGAGGTGAATCTGTTGGAATGAGGACGCTGTCCAACTGCAACTGCAAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+           TAAAGCTCCAGCTCTACGACCAAAAAAGGAAGTTCCCAAAGAAGATGGCTTCACAACCAC
JMFF013M04+           TAAAGCTCCAGCTCTACGACCAAAAAAGGAAGTTCCCAAAGAAGATGGCTTCACAACCAC
JMSF018M10+           TAAAGCTCCAGCTCTACGACCAAAAAAGGAAGTTCCCAAAGAAGATGGCTTCACAACCAC
JMSF037E02+           TAAAGCTCCAGCTCTACGACCAAAAAAGGAAGTTCCCAAAGAAGATGGCTTCACAACCAC
JMSF005M06+           TAAAGCTCCAGCTCTACGACCAAAAAAGGAAGTTCCCAAAGAAGATGGCTTCACAACCAC
                      ____________________________________________________________
consensus             TAAAGCTCCAGCTCTACGACCAAAAAAGGAAGTTCCCAAAGAAGATGGCTTCACAACCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+           TATCCCCTTATTGTTACATGACGGAGCGGAAAGAGTTGAAGCTGTGCTCATTCCTGCTAT
JMFF013M04+           TATCCCCTTATTGTTACATGACGGAGCGGAAAGAGTTGAAGCTGTGCTCATTCCTGCTAT
JMSF018M10+           TATCCCCTTATTGTTACANGACGGAGCGGAAAGAGTTGAAGCTGTGCTCATTCCTGCTAT
JMSF037E02+           TATCCCCTTATTGTTACANGACGGAGCGGAAAGAGTTGAAGCTGTGCTCATTCCTGCTAT
JMSF004P16+                     TTGTTACANGACGGAGCGGAAAGAGTTGAAGCTGTGCTCATTCCTGCTAT
JMSF005M06+           TATCCCCTTATTGTTACANGACGGAGCGGAAAGAGTTGAAGCTGTGCTCATTCCTGCTAT
                      ____________________________________________________________
consensus             TATCCCCTTATTGTTACATGACGGAGCGGAAAGAGTTGAAGCTGTGCTCATTCCTGCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+           GGGTGCTCTTAGAGCCATTTTCTTCTCGGTTAACGAAGCAAAGATTCCGTCTTTGGGCGG
JMFF013M04+           GGGTGCTCTTAGAGCCATTTTCTTCTCGGTTAACGAAGCAAAGATTCCGTCTTTGGGCGG
JMSF018M10+           GGGTGCTCTTAGAGCCATTTTCTTCTCGGTTAACGAAGCAAAGATTCCGTCTTTGGGCGG
JMSF037E02+           GGGTGCTCTTAGAGCCATTTTCTTCTCGGTTAACGAAGCAAAGATTCCGTCTTTGGGCGG
JMSF004P16+           GGGTGCTCTTAGAGCCATTTTCTTCTCGGTTAACGAAGCAAAGATTCCGTCTTTGGGCGG
JMSF005M06+           GGGTGCTCTTAGAGCCATTTTCTTCTCGGTTAACGAAGCAAAGATTCCGTCTTTGGGCGG
                      ____________________________________________________________
consensus             GGGTGCTCTTAGAGCCATTTTCTTCTCGGTTAACGAAGCAAAGATTCCGTCTTTGGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046L06+           GACCGTGTAGGCGTTTGGAGAGAGA                                   
JMFF013M04+           GACCGTGTAGGCGTTTGGAGAGAGAGAGAG                              
JMSF018M10+           GACCGTGTAGGCGTTTGGAGAGAGAGAGAGAGAGAGAGGAGAAGTCGGGAAATCAATATG
JMSF037E02+           GACCGTGTAGGCGTTTGGAGAGAGAGAGAGAGAGAGAGGAGAAGTCGGGAAATCAATATG
JMSF004P16+           GACCGTGTAGGCGTTTGGAGAGAGAGAGAGAGAGAGAGGAGAAGTCGGGAAATCAATATG
JMSF005M06+           GACCGTGTAGGCGTTTGGAGAGAGAGAGAGAGAGAGAGGAGAAGTCGGGAAATCAATATG
                      ____________________________________________________________
consensus             GACCGTGTAGGCGTTTGGAGAGAGAGAGAGAGAGAGAGGAGAAGTCGGGAAATCAATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018M10+           TACTCTGCAAATCCAAAGAAGGGGTCC                                 
JMSF037E02+           TACTCTGCAAATCCAAAGAAGGGGTCC                                 
JMSF004P16+           TACTCTGCAAATCCAAAGAAGGGGTCC                                 
JMSF005M06+           TACTCTGCAAATCCAAAGAAGGGGTCCTGGAGAGGAGAGAGACTGTGCTCTTTTTTTCTC
                      ____________________________________________________________
consensus             TACTCTGCAAATCCAAAGAAGGGGTCCTGGAGAGGAGAGAGACTGTGCTCTTTTTTTCTC