Contig 003532:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004N12Sequence331003532 (4)256003532 (4)
JMSF011H18Sequence440003532 (4)738006191 (7)ref|XP_009773352.1|5e-71PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris]
JMSF050L12Sequence516003532 (4)631010101 (2)ref|XP_009602807.1|6e-99PREDICTED: magnesium transporter MRS2-4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF004N12- GAAGTAGATAGAGGTATGTAGTAACCAGTTTACCTGGG
                      ____________________________________________________________
consensus GAAGTAGATAGAGGTATGTAGTAACCAGTTTACCTGGG
 
. : . : . : . : . : . :
rJMSF004N12- GAGTTAGTGGCTATTACNGTACTGCTAGCCGATTAGGAATTATGATTAAAGTTTTATTTT
                      ____________________________________________________________
consensus GAGTTAGTGGCTATTACNGTACTGCTAGCCGATTAGGAATTATGATTAAAGTTTTATTTT
 
. : . : . : . : . : . :
rJMSF004N12- TTGAATGTTTTATATATATATATATATAATTGGATCGNGGCCCGTATCGGGGATGAGGAA
JMSF050L12+ TATAATTGGATCGGGGCCCGTATCGGGGNTGAGGAA
                      ____________________________________________________________
consensus TTGAATGTTTTATATATATATATATATAATTGGATCGGGGCCCGTATCGGGGATGAGGAA
 
. : . : . : . : . : . :
rJMSF004N12- ATTCTCANCACCCCCNTTCCATAAACCTGGGATCGATTTTTCTATAATAAACAAAT
JMSF050L12+ ATTNTCAGCNCCCCCNTTCCATAAACCTGGGATCGATTTTTCTATAATAAACAAATAAAT
                      ____________________________________________________________
consensus ATTCTCAGCACCCCCNTTCCATAAACCTGGGATCGATTTTTCTATAATAAACAAATAAAT
 
. : . : . : . : . : . :
JMSF050L12+ NAACCCATATATNTCNCCCAAATACATACNAACCGTNTTAATCAAATATTTAAGTNTTAT
                      ____________________________________________________________
consensus NAACCCATATATNTCNCCCAAATACATACNAACCGTNTTAATCAAATATTTAAGTNTTAT
 
. : . : . : . : . : . :
JMSF050L12+ ATTTCCCCTTACAAAATGTTTGAATTAATTTAAAAAAAAAATAAAAATTCAGTAATTTTG
JMSF004N12+ AAAAAAAAAATAAAAATTCAGTAATTTTG
                      ____________________________________________________________
consensus ATTTCCCCTTACAAAATGTTTGAATTAATTTAAAAAAAAAATAAAAATTCAGTAATTTTG
 
. : . : . : . : . : . :
JMSF011H18+ TATATATTTAAACGGGGATTAAAGAGAGAAAATA
JMSF050L12+ TATATGAAAAAAAATAATAGTTAGAATATATATTTAAATGGGGAATGAAGAAAGAAAATA
JMSF004N12+ TATATGAAAAAAAATAATAGTTAGAATATATATTTAAATGGGGAATGAAGAAAGAAAATA
                      ____________________________________________________________
consensus TATATGAAAAAAAATAATAGTTAGAATATATATTTAAATGGGGAATGAAGAAAGAAAATA
 
. : . : . : . : . : . :
JMSF011H18+ AAAGTGGAGATTACCGGATAGCAAAATGGTTGATTTCAAGAACCAATTTACACACAAGAA
JMSF050L12+ AAAGCGGAGATTAGCCTATAGCAAAATGGTTTATTTCAAGAACCAATTTACCCATACAAT
JMSF004N12+ AAAGCGGAGATTAGCCTATAGCAAAATGGTTTATTTCAAGAACCAATTTACCCATACAAT
                      ____________________________________________________________
consensus AAAGCGGAGATTAGCCTATAGCAAAATGGTTTATTTCAAGAACCAATTTACCCATACAAT
 
. : . : . : . : . : . :
JMSF011H18+ AAAAAATATAGATAGAAAAGGG
JMSF050L12+ AAAAAATATAAATAGAAAAGGGTGAGGTAAGCAAAAAAGCTGACCACGAGACTTTGAGCA
JMSF004N12+ AAAAAATATAAATAGAAAAGGGTGAGGTAAGCAAAAAAGCTGACCACGAGACTTTGAGCA
                      ____________________________________________________________
consensus AAAAAATATAAATAGAAAAGGGTGAGGTAAGCAAAAAAGCTGACCACGAGACTTTGAGCA
 
. : . : . : . : . : . :
JMSF050L12+ AGAGAAAAGAGGGCGGAGAGCCGGAGGATCAGAGGGCGGAGATCTTGAGAAGCCGAGGGC
JMSF004N12+ AGAGAAAAGAGGGCGGAGAGCCGGAGGATCAGAGGGCGGAGATCTTGAGAAGCCGAGGGC
                      ____________________________________________________________
consensus AGAGAAAAGAGGGCGGAGAGCCGGAGGATCAGAGGGCGGAGATCTTGAGAAGCCGAGGGC
 
. : . : . : . : . : . :
JMSF050L12+ GCGGAAAGTCGGAGAAGGAAGAAAAGAGAGAGATGGGAGAAGCCGGAGGATCAGAGG
JMSF004N12+ GCGGAAAGTCGGAGAAGGAAGAAAAGAGAGAGATGGGAGAAGCCGGAGGATCAGAGGGCC
                      ____________________________________________________________
consensus GCGGAAAGTCGGAGAAGGAAGAAAAGAGAGAGATGGGAGAAGCCGGAGGATCAGAGGGCC