Contig 003525:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010G14Sequence562003525 (5)ref|XP_009619863.1|1e-40PREDICTED: DCC family protein At1g52590, chloroplastic [Nicotiana tomentosiform561003525 (5)ref|XP_009619863.1|2e-41PREDICTED: DCC family protein At1g52590, chloroplastic [Nicotiana tomentosiform
JMFN006N02Sequence624003525 (5)dbj|BAJ53228.1|3e-78JHL06P13.8 [Jatropha curcas] gb|KDP37101.1| hypothetical protein JCGZ_06157 [Jat
JMSF003L09Sequence480003525 (5)dbj|BAJ53228.1|1e-64JHL06P13.8 [Jatropha curcas] gb|KDP37101.1| hypothetical protein JCGZ_06157 [Jat
JMSF005G09Sequence450012513 (2)ref|XP_004250216.1|3e-44PREDICTED: auxin-induced protein 6B-like [Solanum lycopersicum]349003525 (5)ref|XP_009619863.1|1e-20PREDICTED: DCC family protein At1g52590, chloroplastic [Nicotiana tomentosiform

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010G14+                                      TTTTTTTTTTGCTTATCAATGGAATAAGATAGG
rJMFF010G14-                                                                   AGG
                      ____________________________________________________________
consensus                                        TTTTTTTTTTGCTTATCAATGGAATAAGATAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010G14+           AAAAGAATTCTAACTACATCCAACCAAACACCCTGTGCCATTAGGGCTCAATCTTGTGTT
rJMFF010G14-          AAAAGAATTCTAACTACATCCAACCAAACACCCTGTGCCATTAGGGCTCAATCTTGTGTT
                      ____________________________________________________________
consensus             AAAAGAATTCTAACTACATCCAACCAAACACCCTGTGCCATTAGGGCTCAATCTTGTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010G14+           TTTCTCATAATCCAGAAACTAATTAAGCTATTTGTGCTAGCAAATTTACGTTTATGTTTG
rJMFF010G14-          TTTCTCATAATCCAGAAACTAATTAAGCTATTTGTGCTAGCAAATTTACGTTTATGTTTG
                      ____________________________________________________________
consensus             TTTCTCATAATCCAGAAACTAATTAAGCTATTTGTGCTAGCAAATTTACGTTTATGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005G09-                             TGTGCCGTATTCNGGTTTTACATTGCTCTTTCTTTTTTATG
JMFF010G14+           CAAATATTACTTGTAAGTATGTGCCGTATTCTGGTTTTACATTGCTCTTTCTTTTTTATG
rJMFF010G14-          CAAATATTACTTGTAAGTATGTGCCGTATTCTGGTTTTACATTGCTCTTTCTTTTTTATG
JMFN006N02+                              TGTGCCGTATTCTGGTTTTACATGGCTCTTTCTTTTTTATG
                      ____________________________________________________________
consensus             CAAATATTACTTGTAAGTATGTGCCGTATTCTGGTTTTACATTGCTCTTTCTTTTTTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005G09-          TATATACATTTACACNATAACTATTGGCACAATGGAATACTACAAGTTCTATATCTCACA
JMFF010G14+           TATATACATTTACACTATAACTATTGGCACAATGGAATACTACAA-TTCTATATCTCACA
rJMFF010G14-          TATATACATTTACACTATAACTATTGGCACAATGGAATACTACAA-TTCTATATCTCACA
JMFN006N02+           TATATACATTTACACTATAACTATTGGCACAATGGAATACTACAA-TTCTATATCTCACA
                      ____________________________________________________________
consensus             TATATACATTTACACTATAACTATTGGCACAATGGAATACTACAA-TTCTATATCTCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005G09-          CGAATCNNAGCGACCAAAANATGCATAGCGGTTATTAGCGACGTTATCGTATGCGAAATC
JMFF010G14+           CGAATCAGAGCGACCAAAAAATGCATAGCGGTTATTAGCGACATTATCGTATGCGAAATC
rJMFF010G14-          CGAATCAGAGCGACCAAAAAATGCATAGCGGTTATTAGCGACATTATCGTATGCGAAATC
JMFN006N02+           CGAATCAGAGCGACCAAAAAATGCATAGCGGTTATTAGCGACATTATCGTATGCGAAATC
JMSF003L09+                                                                      C
                      ____________________________________________________________
consensus             CGAATCAGAGCGACCAAAAAATGCATAGCGGTTATTAGCGACATTATCGTATGCGAAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005G09-          TCGGACAAACAGAGGAACAAAGTTGGNAGAAGAAAGATNGCTGGGGGAAAGGCAGGTTTA
JMFF010G14+           TCGGACAAACAGAGGAACAAA-TTGGAAGAAGAAAGATAGCTGGGGGAAAGGCAAGTTTA
rJMFF010G14-          TCGGACAAACAGAGGAACAAA-TTGGAAGAAGAAAGATAGCTGGGGGAAAGGCAAGTTTA
JMFN006N02+           TCGGACAAACAGAGGAACAAA-TTGGAAGAAGAAAGATAGCTGGGGGAAAGGCAAGTTTA
JMSF003L09+           TCGGACAAACAGAGGAACAAA-TTGAAAGAAGAAAGATAGCTGGGGGAAAGGCAAGTTTA
                      ____________________________________________________________
consensus             TCGGACAAACAGAGGAACAAA-TTGGAAGAAGAAAGATAGCTGGGGGAAAGGCAAGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005G09-          NGTACTGCATGATTCTCAGAACAGCTTCGGATTTCACGTACGACCTCTCTNTTTCAACAA
JMFF010G14+           TGTACTGCATGATTCTCAGAACAGCTTCGGATTTCACGTACGACCTCTCTTTTTCAACAA
rJMFF010G14-          TGTACTGCATGATTCTCAGAACAGCTTCGGATTTCACGTACGACCTCTCTTTTTCAACAA
JMFN006N02+           TGTACTGCATGATTCTCAGAACAGCTTCGGATTTCACGTACGACCTCTCTTTTTCAACAA
JMSF003L09+           TGTACTGCATGATTCTCAGAACAGCTTCGGATTTCACGTACGACCTCTCTTTTTCAACAA
                      ____________________________________________________________
consensus             TGTACTGCATGATTCTCAGAACAGCTTCGGATTTCACGTACGACCTCTCTTTTTCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005G09-          GGACTACACTTGANATATCANCAGGAGCTCTTCCAGATCTCCTTNACAGCTTCTNCCCTG
JMFF010G14+           GTACTACACTTGAAATATCATCAGGAGCTCTTCCAGATCTCCTTAACAGCTTCTTCCCTG
rJMFF010G14-          GTACTACACTTGAAATATCATCAGGAGCTCTTCCAGATCTCCTTAACAGCTTCTTCCCTG
JMFN006N02+           GTACTACACTTGAAATATCATCAGGAGCTCTTCCAGATCTCCTTAACAGCTTCTTCCCTG
JMSF003L09+           GTACTACACTTGAAATATCATCAGGAGCTCTTCCAGATCTCCTTAACAGCTTCTTCCCTG
                      ____________________________________________________________
consensus             GTACTACACTTGAAATATCATCAGGAGCTCTTCCAGATCTCCTTAACAGCTTCTTCCCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005G09-          CCTCAC                                                      
JMFF010G14+           CCTCACTCTGTAGAGCCTCAAACCGAATTCTCCTTCGGCTATCATTGTCAC         
rJMFF010G14-          CCTCACTCTGTAGAGCCTCAAACCGAATTCTCCTTCGGCTATCATTGTCACGGA      
JMFN006N02+           CCTCACTCTGTAGAGCCTCAAACCGAATTCTCCTTCGGCTATCATTGTCACGGACAAATT
JMSF003L09+           CCTCACTCTGTAGAGCCTCAAACCGAATTCTCCTTCGGCTATCATTGTCACGGACAAATT
                      ____________________________________________________________
consensus             CCTCACTCTGTAGAGCCTCAAACCGAATTCTCCTTCGGCTATCATTGTCACGGACAAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006N02+           TCACTCCTCCGTTGCATAAATTGCATACACCGTCGAACAGCATGATGGGGCGAGTGTCCG
JMSF003L09+           TCACTCCTCCGTTGCATAAATTGCATACACCGTCGAACAGCATGATGGGGCGAGTGTCCG
                      ____________________________________________________________
consensus             TCACTCCTCCGTTGCATAAATTGCATACACCGTCGAACAGCATGATGGGGCGAGTGTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006N02+           CTTCAAAGAAGCTGGCAGTTGCCTCAACCCAATCCACGGCTTTCTCTCCGCCGGAGCTCG
JMSF003L09+           CTTCAAAGAAGCTGGCAGTTGCCTCAACCCAATCCACGGCTTTCTCTCCGCCGGAGCTCG
                      ____________________________________________________________
consensus             CTTCAAAGAAGCTGGCAGTTGCCTCAACCCAATCCACGGCTTTCTCTCCGCCGGAGCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006N02+           GCGGAGACGATACAGTGGCGAAAACAGTGAGGCGGCGGCGCGGCACGTGAACCCGAGGCG
JMSF003L09+           GCGGAGACGATACAGTGGCGAAAACAGTGAGGCGGCGGCGCGGCACGTGAACCCGAGGCG
                      ____________________________________________________________
consensus             GCGGAGACGATACAGTGGCGAAAACAGTGAGGCGGCGGCGCGGCACGTGAACCCGAGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006N02+           CCACCGTCAAACGCGCGGACCCAGCCGGTAGAGTTAGCGCCATAT               
JMSF003L09+           CCACCGTCAAACGCGCGGACCCAGCCGGTAGAGTTAGCGCCATATTCACCTCCCTTCCAG
                      ____________________________________________________________
consensus             CCACCGTCAAACGCGCGGACCCAGCCGGTAGAGTTAGCGCCATATTCACCTCCCTTCCAG