Contig 003504:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033A23Sequence554003504 (3)ref|XP_010658715.1|2e-64PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera]725006894 (3)emb|CAN63457.1|5e-113hypothetical protein VITISV_008241 [Vitis vinifera]
JMSF001L21Sequence289003504 (3)ref|XP_007040415.1|2e-10POZ/BTB containin G-protein 1 isoform 4 [Theobroma cacao] gb|EOY24916.1| POZ/BTB718006894 (3)emb|CAN63457.1|2e-114hypothetical protein VITISV_008241 [Vitis vinifera]
JMSF033H06Sequence354003504 (3)710006894 (3)emb|CAN63457.1|9e-114hypothetical protein VITISV_008241 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF033A23+ TTGCTGCCAAGATTGG
                      ____________________________________________________________
consensus TTGCTGCCAAGATTGG
 
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JMFF033A23+ AGAACTAATGTGTATGGTTTTAACTCTAAGGACATTCGAACAGTCCATATTTGATGATGA
                      ____________________________________________________________
consensus AGAACTAATGTGTATGGTTTTAACTCTAAGGACATTCGAACAGTCCATATTTGATGATGA
 
. : . : . : . : . : . :
JMFF033A23+ GTCATTGCCCTCAGCAGCTTCCTCATCAGGGTGATCTGCCATATCTCCAGTGCCAGATGG
                      ____________________________________________________________
consensus GTCATTGCCCTCAGCAGCTTCCTCATCAGGGTGATCTGCCATATCTCCAGTGCCAGATGG
 
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JMFF033A23+ TGTTTCCTCGACCATTGCTACAGCTTCCTCATCTAGATTCTCATATACAGGGCCATCTTC
                      ____________________________________________________________
consensus TGTTTCCTCGACCATTGCTACAGCTTCCTCATCTAGATTCTCATATACAGGGCCATCTTC
 
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JMFF033A23+ GGTATCCAACATGTTGCAGTTCAAGACCTGCTCCTCACAATGCGAGACGACATCCACAGC
                      ____________________________________________________________
consensus GGTATCCAACATGTTGCAGTTCAAGACCTGCTCCTCACAATGCGAGACGACATCCACAGC
 
. : . : . : . : . : . :
JMFF033A23+ ATTCTCCTTCATGATTTCTTCTCGGCGGCGCTTGCGTTTGCGGGCCCAATCAACGATGCT
                      ____________________________________________________________
consensus ATTCTCCTTCATGATTTCTTCTCGGCGGCGCTTGCGTTTGCGGGCCCAATCAACGATGCT
 
. : . : . : . : . : . :
JMFF033A23+ GCTGCAGCCCTCGCCGTCGGATTTGGAGTCCGGCAAGTCAGGCAGGACCTCAATCCTTAG
JMSF033H06+ GCCCTNGCCGTCGGATTTGGAGTCCGGCAAGTCAGGCAGGACCTCAATCTTTAG
                      ____________________________________________________________
consensus GCTGCAGCCCTCGCCGTCGGATTTGGAGTCCGGCAAGTCAGGCAGGACCTCAATCTTTAG
 
. : . : . : . : . : . :
JMFF033A23+ GATCCGGTCGGAGAAATTGCTGTCGTTGAAGGCGAACGCGAAGTCGGATTCGGAGCCCGA
JMSF033H06+ GATCCGGTCGGAGAAATTGCNGTCGTTGAAGGCGAACGCGAAGTNGGATTNGGANCCCGA
JMSF001L21+ AGAAATTGCTGTCGTTGAAGGCGAACGCGAAGTCGGATTCGGAGCCCGA
                      ____________________________________________________________
consensus GATCCGGTCGGAGAAATTGCTGTCGTTGAAGGCGAACGCGAAGTCGGATTCGGAGCCCGA
 
. : . : . : . : . : . :
JMFF033A23+ CCCGTGGTGATCGGCAGGAGAGGAATCCGAGTCCATCACCGTGCGTGGATCAAAAAGGTC
JMSF033H06+ CCCGTGGTGATCGGCAGGAGAGGAATCCGAGTCCATCNCCGTGCGTGGATCNAAAAGGTC
JMSF001L21+ CCCGTGGTGATCGGCAGGAGAGGAATCCGAGTCCATCACCGTGCGTGGATCAAAAAGGTC
                      ____________________________________________________________
consensus CCCGTGGTGATCGGCAGGAGAGGAATCCGAGTCCATCACCGTGCGTGGATCAAAAAGGTC
 
. : . : . : . : . : . :
JMFF033A23+ CACGTTCT
JMSF033H06+ CACGTTCTGGTTTTTCATATGAAGAAACCAAATCACCAAAAAAAAATAAAAAAATTATAA
JMSF001L21+ CACGTTCTGGTTTTTCATATGAAGAAACCAAATCACCAAAAAAAAATAAAAAAATTATAA
                      ____________________________________________________________
consensus CACGTTCTGGTTTTTCATATGAAGAAACCAAATCACCAAAAAAAAATAAAAAAATTATAA
 
. : . : . : . : . : . :
JMSF033H06+ TTAAACANCGAANTATTGCAGGAAAAATTAAGGAAGAAGACGAAGAAGAATGGTTGGAGA
JMSF001L21+ TTAAACAACGAATTATTGCAGGAAAAATTAAGGAAGAAGACGAAGAAGAATGGTTGGAGA
                      ____________________________________________________________
consensus TTAAACAACGAATTATTGCAGGAAAAATTAAGGAAGAAGACGAAGAAGAATGGTTGGAGA
 
. : . : . : . : . : . :
JMSF033H06+ AGGTCCGGAGAGGATCAGTTGGGCAATATGTTTTGTTTTGTTCTGTGTATTTTCTGTAC
JMSF001L21+ AGGTCCGGAGAGGATCAGTTGGGCAATATGTTTTGTTTTGTTCTGTGTATTTTCTGTACC
                      ____________________________________________________________
consensus AGGTCCGGAGAGGATCAGTTGGGCAATATGTTTTGTTTTGTTCTGTGTATTTTCTGTACC