Contig 003502:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K21Sequence251003502 (3)772014937emb|CAG29362.1|6e-36putative type II NAD(P)H dehydrogenase [Arabidopsis thaliana]
JMSF021F15Sequence675003502 (3)ref|XP_010547688.1|3e-58PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito802014027 (2)ref|XP_009791312.1|1e-113PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito
JMSF033B09Sequence692003502 (3)ref|XP_010547688.1|3e-65PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito759014027 (2)ref|XP_009791312.1|3e-102PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF033B09+ ACCAGTCATATTCAATA
                      ____________________________________________________________
consensus ACCAGTCATATTCAATA
 
. : . : . : . : . : . :
JMSF033B09+ GCTAGGCCACTTTCAAGATGAACAGTTCCTCCAGGGCCAGTTGGTGCAGGCACATTTGTC
JMSF021F15+ ATGAACAGTTCCTCCAGGGCCAGTTGGTGCAGGCACATTTGTC
                      ____________________________________________________________
consensus GCTAGGCCACTTTCAAGATGAACAGTTCCTCCAGGGCCAGTTGGTGCAGGCACATTTGTC
 
. : . : . : . : . : . :
JMSF033B09+ AGCAAATGGTCACGTGGATATAGGCACTTGACCCTATCTTTGAAGAACTGCACGCTGGTG
JMSF021F15+ AGCAAATGGTCACGTGGATATAGGCACTTGACCCTATCTTTGAAGAACTGCACGCTGGTG
                      ____________________________________________________________
consensus AGCAAATGGTCACGTGGATATAGGCACTTGACCCTATCTTTGAAGAACTGCACGCTGGTG
 
. : . : . : . : . : . :
JMSF033B09+ TTTGCAAGCAATTGAGAGAATAATGGTGCAATTTCCCACATGTCTACTTCCCCAGAAAGA
JMSF021F15+ TTTGCAAGCAATTGAGAGAATAATGGTGCAATTTCCCACATGTCTACTTCCCCAGAAAGA
                      ____________________________________________________________
consensus TTTGCAAGCAATTGAGAGAATAATGGTGCAATTTCCCACATGTCTACTTCCCCAGAAAGA
 
. : . : . : . : . : . :
JMSF033B09+ AGTTCATATAACATGGGCTTAAAAACAAAGCGTTCAGATTGATCAACAAGGATGACCTGG
JMSF021F15+ AGTTCATATAACATGGGCTTAAAAACAAAGCGTTCAGATTGATCAACAAGGATGACCTGG
                      ____________________________________________________________
consensus AGTTCATATAACATGGGCTTAAAAACAAAGCGTTCAGATTGATCAACAAGGATGACCTGG
 
. : . : . : . : . : . :
JMSF033B09+ GGCTTTTTGTCATCACTCCAAACAAGTGATTCCAATCTTAGTGCTGTGTAAAGTCCTCCA
JMSF021F15+ GGCTTTTTGTCATCACTCCAAACAAGTGATTCCAATCTTAGTGCTGTGTAAAGTCCTCCA
                      ____________________________________________________________
consensus GGCTTTTTGTCATCACTCCAAACAAGTGATTCCAATCTTAGTGCTGTGTAAAGTCCTCCA
 
. : . : . : . : . : . :
JMSF033B09+ AATCCACCACCAAGTATGCATACCCTTGGCCTCTTGTTATCAGGCCATTTAAAGGTAACA
JMSF021F15+ AATCCACCACCAAGTATGCATACCCTTGGCCTCTTGTTATCAGGCCATTTAAAGGTAACA
                      ____________________________________________________________
consensus AATCCACCACCAAGTATGCATACCCTTGGCCTCTTGTTATCAGGCCATTTAAAGGTAACA
 
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JMSF033B09+ GGTTTAGAACCGTCAATTCCATTTGCTTCCACAGTGCTCCCATTTCCCCGACCCGCATTG
JMSF021F15+ GGTTTAGAACCGTCAATTCCATTTGCTTCCACAGTGCTCCCATTTCCCCGACCCGCATTG
                      ____________________________________________________________
consensus GGTTTAGAACCGTCAATTCCATTTGCTTCCACAGTGCTCCCATTTCCCCGACCCGCATTG
 
. : . : . : . : . : . :
JMSF033B09+ GCATTGACTCGGAATGACTCGCCCCGCACTGCGATGCTACCAGAAGAAGCAGAACTAATG
JMSF021F15+ GCATTGACTCGGAATGACTCGCCCCGCACTGCGATGCTACCAGAAGAAGCAGAACTAATG
JMSF001K21+ CAGAAGAAGCAGAACTAATG
                      ____________________________________________________________
consensus GCATTGACTCGGAATGACTCGCCCCGCACTGCGATGCTACCAGAAGAAGCAGAACTAATG
 
. : . : . : . : . : . :
JMSF033B09+ CTTTCACTCCGAATATTCTTACTCTTGCGACTGCTCCTAAATTGCATCAGAATCGAAGAT
JMSF021F15+ CTTTCACTCCAAATATTCTTACTCTTGCGACTGCTCCTAAATTGCATCAGAATCGAAGAT
JMSF001K21+ CTTTCACTCCGAATATTCTTACTCTTGCGACTGCTCCTAAATTGCATCAGAATCGAAGAT
                      ____________________________________________________________
consensus CTTTCACTCCGAATATTCTTACTCTTGCGACTGCTCCTAAATTGCATCAGAATCGAAGAT
 
. : . : . : . : . : . :
JMSF033B09+ TGCGTCTTTGGAAATGTTCCTGAAATTGGAGTGTTGAAAGTGAACAGTCGTGTTGCTGTG
JMSF021F15+ TGCGTCTTTGGAAATGTTCCTGAAATTGGAGTGTTGAAAGTGAACAGTCGTGTTGCTGTG
JMSF001K21+ TGCGTCTTTGGAAATGTTC---------GAGTGTTGAAAGTGAACAGTCGTGTTGCTGTG
                      ____________________________________________________________
consensus TGCGTCTTTGGAAATGTTCCTGAAATTGGAGTGTTGAAAGTGAACAGTCGTGTTGCTGTG
 
. : . : . : . : . : . :
JMSF033B09+ GCTGAAGCATAAGAGGAAGATCTCGCGACAGCAGCGTGGGATGCCATTACTGACTGACTG
JMSF021F15+ GCTGAAGCATAAGAGGAAGATCTCGCGACAGCAGCGTGGGATGCCATTACTGACTGACTG
JMSF001K21+ GCTGAAGCATAAGAGGAAGATCTCGCGACAGCAGCGTGGGATGCCATTACTGACTGACTG
                      ____________________________________________________________
consensus GCTGAAGCATAAGAGGAAGATCTCGCGACAGCAGCGTGGGATGCCATTACTGACTGACTG
 
. : . : . : . : . : . :
JMSF033B09+ CTTCTCCAGTGAT
JMSF021F15+ CTTCTCCAGTGATTAGGTGATGGCGGTAACT
JMSF001K21+ CTTCTCCAGTGATTAGGTGATGGCGGTAACTGGTAAGAGTAAGAGAAAGGCCCCAATTTC
                      ____________________________________________________________
consensus CTTCTCCAGTGATTAGGTGATGGCGGTAACTGGTAAGAGTAAGAGAAAGGCCCCAATTTC