Contig 003497:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS168E04Sequence614003497 (2)emb|CDP07299.1|8e-65unnamed protein product [Coffea canephora]
JMSF006L17Sequence391023121ref|XP_006342121.1|2e-33PREDICTED: pre-rRNA-processing protein TSR1 homolog [Solanum tuberosum]252003497 (2)

Alignment

This contig is upended


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JMFS168E04-                                                         AAGACTGATGGAGA
                      ____________________________________________________________
consensus                                                           AAGACTGATGGAGA
 
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JMFS168E04-           ATCTACTTCATTGGCTGTTGCCGCTGTTGGTTCCTTGAGAAGTATTGACCCTAATAGAAT
                      ____________________________________________________________
consensus             ATCTACTTCATTGGCTGTTGCCGCTGTTGGTTCCTTGAGAAGTATTGACCCTAATAGAAT
 
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JMFS168E04-           TATTCTGAAGAAAATTATTTTGACTGGTTACCCTCAAAGAGTGTCAAAAATGAGAGCCTC
                      ____________________________________________________________
consensus             TATTCTGAAGAAAATTATTTTGACTGGTTACCCTCAAAGAGTGTCAAAAATGAGAGCCTC
 
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JMFS168E04-           TGTTAGATACATGTTTCACAGTCCCGATGATGTGAGATGGTTCAAGCCTGTTGAGGTTTG
                      ____________________________________________________________
consensus             TGTTAGATACATGTTTCACAGTCCCGATGATGTGAGATGGTTCAAGCCTGTTGAGGTTTG
 
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JMFS168E04-           GACAAAGTGTGGTCGCCGTGGTCGTATTAGGGAACCTCTTGGCACACATGGGGCAATGAA
                      ____________________________________________________________
consensus             GACAAAGTGTGGTCGCCGTGGTCGTATTAGGGAACCTCTTGGCACACATGGGGCAATGAA
 
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rJMSF006L17+                                                       GAGTTTGTTCAAACG
JMFS168E04-           GTGCGTTTTCAATGGAGTCCTCCAGCAGCACGACACTGTATGCATGAGTTTGTTCAAACG
                      ____________________________________________________________
consensus             GTGCGTTTTCAATGGAGTCCTCCAGCAGCACGACACTGTATGCATGAGTTTGTTCAAACG
 
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rJMSF006L17+          NGCATNCCCCCGCTGGCCGAACCNGTGGTNCCCAATTGGCGCTTAGCTTTTAAANCGGTT
JMFS168E04-           TGCATACCCCCGCTGGCCGAACCAGTGGTACCCAATTGGCGCTTAGCTTTTAAAGCGGTT
                      ____________________________________________________________
consensus             TGCATACCCCCGCTGGCCGAACCAGTGGTACCCAATTGGCGCTTAGCTTTTAAAGCGGTT
 
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rJMSF006L17+          CCNTNTGGGATCNGGGAGGGNTGGCNNTCTTGGTTCTTTATGNTAATTAANGGGAANGAA
JMFS168E04-           CCATCTGGGATCGGGGAGGGTTGGCATTCTTGTTTCTTTATGCTAATTAATGGGAATGAA
                      ____________________________________________________________
consensus             CCATCTGGGATCGGGGAGGGTTGGCATTCTTGTTTCTTTATGCTAATTAATGGGAATGAA
 
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rJMSF006L17+          GCTNTGGTTCAGAATNGGCTNTTCNTTGTGTCCGATGGCAAGNANNTNCNTGCAACCNAG
JMFS168E04-           GCTCTGGTTCAGAATAGGCTATTCATTGTGTCCGATGGCAAGAAGCTACATGCAACCAAG
                      ____________________________________________________________
consensus             GCTCTGGTTCAGAATAGGCTATTCATTGTGTCCGATGGCAAGAAGCTACATGCAACCAAG
 
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rJMSF006L17+          NGCCNAATGCCTTGTTTTTGCCAGATATGTGNATAGCCAAAAATTTTGCATACG      
JMFS168E04-           TGCCAAATGCCTTGTTTTTGCTAGATATGTGTATAGCCAAAAATTTTGCATACGCTTCTA
                      ____________________________________________________________
consensus             TGCCAAATGCCTTGTTTTTGCTAGATATGTGTATAGCCAAAAATTTTGCATACGCTTCTA
 
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JMFS168E04-           TTTATCTATGTATTCTATAAGTATTATTGGGGTAAAAGGCTCCTGCCTTAATTGGATACA
                      ____________________________________________________________
consensus             TTTATCTATGTATTCTATAAGTATTATTGGGGTAAAAGGCTCCTGCCTTAATTGGATACA