clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS121G07 | Sequence | 563 | 003461 (2) | ref|XP_010276717.1| | 8e-22 | PREDICTED: calcium-transporting ATPase 10, plasma membrane-type [Nelumbo nucife | |||||
JMSF047A07 | Sequence | 671 | 017943 | ref|XP_006366962.1| | 2e-68 | PREDICTED: calcium-transporting ATPase 8, plasma membrane-type-like isoform X1 | 737 | 003461 (2) | ref|XP_009601429.1| | 1e-83 | PREDICTED: calcium-transporting ATPase 8, plasma membrane-type [Nicotiana tomen |
This contig is upended
. : . : . : . : . : . :
rJMSF047A07+ CACAG
____________________________________________________________
consensus CACAG
. : . : . : . : . : . :
rJMSF047A07+ AACCACCGACAGATCATCTAATGGAAAGACCTCCTGTTGGTCGAAGGGAACCACTCATAA
____________________________________________________________
consensus AACCACCGACAGATCATCTAATGGAAAGACCTCCTGTTGGTCGAAGGGAACCACTCATAA
. : . : . : . : . : . :
rJMSF047A07+ CTAATATCATGTGGAGGAACCTTATAATACAGGCTTTGTATCAAGTTACAGTTCTCTTAG
____________________________________________________________
consensus CTAATATCATGTGGAGGAACCTTATAATACAGGCTTTGTATCAAGTTACAGTTCTCTTAG
. : . : . : . : . : . :
rJMSF047A07+ TACTTAACTTCCGCGGTATAAGTATTTTGAGCTTGGGCAACAGGGACGATGCTGTTGATG
____________________________________________________________
consensus TACTTAACTTCCGCGGTATAAGTATTTTGAGCTTGGGCAACAGGGACGATGCTGTTGATG
. : . : . : . : . : . :
rJMSF047A07+ TGAAGAACACTGTGATTTTCAACGCATTTGTTCTCAGCCAGTTATTCAATGAATTCAATG
____________________________________________________________
consensus TGAAGAACACTGTGATTTTCAACGCATTTGTTCTCAGCCAGTTATTCAATGAATTCAATG
. : . : . : . : . : . :
rJMSF047A07+ CTCGAAAACCCGATGAGATTAATGTTTTCAGCGGAGTCCATAGAAACCACTTGTTTGTGT
____________________________________________________________
consensus CTCGAAAACCCGATGAGATTAATGTTTTCAGCGGAGTCCATAGAAACCACTTGTTTGTGT
. : . : . : . : . : . :
rJMSF047A07+ TTATTGTTTCCCTTACTCTGGTGATTCAGGTTATAATTATCATGTTCCTTGGAAAGTTCA
JMFS121G07+ ATCATGTTCCTTGGAAAGTTCA
____________________________________________________________
consensus TTATTGTTTCCCTTACTCTGGTGATTCAGGTTATAATTATCATGTTCCTTGGAAAGTTCA
. : . : . : . : . : . :
rJMSF047A07+ CTTCAACAGTTAGACTTAGCTGGAAATTCTGGCTTGTGTCTATTGCTATTGGCTTTATCA
JMFS121G07+ CTTCAACAGTTAGACTTAGCTGGAAATTCTGGCTTGTGTCTATTGCTATTGGCTTTATCA
____________________________________________________________
consensus CTTCAACAGTTAGACTTAGCTGGAAATTCTGGCTTGTGTCTATTGCTATTGGCTTTATCA
. : . : . : . : . : . :
rJMSF047A07+ GCTGGCCTCTTGCTGTGATTGGGAAGTTGATACCCGTTCCTGAGACGCCATTCACAGAAT
JMFS121G07+ GCTGGCCTCTTGCTGTGATTGGGAAGTTGATACCCGTTCCTGAGACGCCATTCACAGAAT
____________________________________________________________
consensus GCTGGCCTCTTGCTGTGATTGGGAAGTTGATACCCGTTCCTGAGACGCCATTCACAGAAT
. : . : . : . : . : . :
rJMSF047A07+ CATTTAAAAGAAAAAGGCACACACGAAGATAGATTGATTGATTGGTCACGAAGAGTTGGT
JMFS121G07+ CATTTAAAAGAAAAAGGCACACACGAAGATAGATTGATTGATTGGTCACGAAGAGTTGGT
____________________________________________________________
consensus CATTTAAAAGAAAAAGGCACACACGAAGATAGATTGATTGATTGGTCACGAAGAGTTGGT
. : . : . : . : . : . :
rJMSF047A07+ TCTACGGCTACGGGCATCAAGAGTTTGTTTTCTAACACATCTGCCTCCGTATCTTTGAAA
JMFS121G07+ TCTACGGCTACGGGCATCAAGAGTTTGTTTTCTAACACATCTGCCTCCGTATCTTTGAAA
____________________________________________________________
consensus TCTACGGCTACGGGCATCAAGAGTTTGTTTTCTAACACATCTGCCTCCGTATCTTTGAAA
. : . : . : . : . : . :
rJMSF047A07+ TATACAAATCTAACCGTCTATAAACATGTACATACAAACAACATAATAGGTTGCAACTAA
JMFS121G07+ TATACAAATCTAACCGTCTATAAACATGTACATACAAACAACATAATAGGTTGCAACTAA
____________________________________________________________
consensus TATACAAATCTAACCGTCTATAAACATGTACATACAAACAACATAATAGGTTGCAACTAA
. : . : . : . : . : . :
rJMSF047A07+ TTGATGATCTCTGGCTTACTGATATGCCCGCTCATCGTGGATTTGAATTTGGTGTTTGAA
JMFS121G07+ TTGATGATCTCTGGCTTACTGATATGCCCGCTCATCGTGGATTTGAATTTGGTGTTTGAA
____________________________________________________________
consensus TTGATGATCTCTGGCTTACTGATATGCCCGCTCATCGTGGATTTGAATTTGGTGTTTGAA
. : . : . : . : . : . :
rJMSF047A07+ AGTTCTATTCCT
JMFS121G07+ AGTTCTATTCCTGTTCTGGCGAACTCGTAACATGGTTGTGAATGTGGTATTTCTTATATT
____________________________________________________________
consensus AGTTCTATTCCTGTTCTGGCGAACTCGTAACATGGTTGTGAATGTGGTATTTCTTATATT
. : . : . : . : . : . :
JMFS121G07+ TGTCAAAGATAACATATTACTTAATATTTTACTGTATATTTGAATTTAATTTGTACTTGT
____________________________________________________________
consensus TGTCAAAGATAACATATTACTTAATATTTTACTGTATATTTGAATTTAATTTGTACTTGT
. : . : . : . : . : . :
JMFS121G07+ ATGTATCGTTTACACTTTGAATTGCTXXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGT
____________________________________________________________
consensus ATGTATCGTTTACACTTTGAATTGCTNNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGT