Contig 003461:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS121G07Sequence563003461 (2)ref|XP_010276717.1|8e-22PREDICTED: calcium-transporting ATPase 10, plasma membrane-type [Nelumbo nucife
JMSF047A07Sequence671017943ref|XP_006366962.1|2e-68PREDICTED: calcium-transporting ATPase 8, plasma membrane-type-like isoform X1 737003461 (2)ref|XP_009601429.1|1e-83PREDICTED: calcium-transporting ATPase 8, plasma membrane-type [Nicotiana tomen

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+                                                                 CACAG
                      ____________________________________________________________
consensus                                                                    CACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          AACCACCGACAGATCATCTAATGGAAAGACCTCCTGTTGGTCGAAGGGAACCACTCATAA
                      ____________________________________________________________
consensus             AACCACCGACAGATCATCTAATGGAAAGACCTCCTGTTGGTCGAAGGGAACCACTCATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          CTAATATCATGTGGAGGAACCTTATAATACAGGCTTTGTATCAAGTTACAGTTCTCTTAG
                      ____________________________________________________________
consensus             CTAATATCATGTGGAGGAACCTTATAATACAGGCTTTGTATCAAGTTACAGTTCTCTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          TACTTAACTTCCGCGGTATAAGTATTTTGAGCTTGGGCAACAGGGACGATGCTGTTGATG
                      ____________________________________________________________
consensus             TACTTAACTTCCGCGGTATAAGTATTTTGAGCTTGGGCAACAGGGACGATGCTGTTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          TGAAGAACACTGTGATTTTCAACGCATTTGTTCTCAGCCAGTTATTCAATGAATTCAATG
                      ____________________________________________________________
consensus             TGAAGAACACTGTGATTTTCAACGCATTTGTTCTCAGCCAGTTATTCAATGAATTCAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          CTCGAAAACCCGATGAGATTAATGTTTTCAGCGGAGTCCATAGAAACCACTTGTTTGTGT
                      ____________________________________________________________
consensus             CTCGAAAACCCGATGAGATTAATGTTTTCAGCGGAGTCCATAGAAACCACTTGTTTGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          TTATTGTTTCCCTTACTCTGGTGATTCAGGTTATAATTATCATGTTCCTTGGAAAGTTCA
JMFS121G07+                                                 ATCATGTTCCTTGGAAAGTTCA
                      ____________________________________________________________
consensus             TTATTGTTTCCCTTACTCTGGTGATTCAGGTTATAATTATCATGTTCCTTGGAAAGTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          CTTCAACAGTTAGACTTAGCTGGAAATTCTGGCTTGTGTCTATTGCTATTGGCTTTATCA
JMFS121G07+           CTTCAACAGTTAGACTTAGCTGGAAATTCTGGCTTGTGTCTATTGCTATTGGCTTTATCA
                      ____________________________________________________________
consensus             CTTCAACAGTTAGACTTAGCTGGAAATTCTGGCTTGTGTCTATTGCTATTGGCTTTATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          GCTGGCCTCTTGCTGTGATTGGGAAGTTGATACCCGTTCCTGAGACGCCATTCACAGAAT
JMFS121G07+           GCTGGCCTCTTGCTGTGATTGGGAAGTTGATACCCGTTCCTGAGACGCCATTCACAGAAT
                      ____________________________________________________________
consensus             GCTGGCCTCTTGCTGTGATTGGGAAGTTGATACCCGTTCCTGAGACGCCATTCACAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          CATTTAAAAGAAAAAGGCACACACGAAGATAGATTGATTGATTGGTCACGAAGAGTTGGT
JMFS121G07+           CATTTAAAAGAAAAAGGCACACACGAAGATAGATTGATTGATTGGTCACGAAGAGTTGGT
                      ____________________________________________________________
consensus             CATTTAAAAGAAAAAGGCACACACGAAGATAGATTGATTGATTGGTCACGAAGAGTTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          TCTACGGCTACGGGCATCAAGAGTTTGTTTTCTAACACATCTGCCTCCGTATCTTTGAAA
JMFS121G07+           TCTACGGCTACGGGCATCAAGAGTTTGTTTTCTAACACATCTGCCTCCGTATCTTTGAAA
                      ____________________________________________________________
consensus             TCTACGGCTACGGGCATCAAGAGTTTGTTTTCTAACACATCTGCCTCCGTATCTTTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          TATACAAATCTAACCGTCTATAAACATGTACATACAAACAACATAATAGGTTGCAACTAA
JMFS121G07+           TATACAAATCTAACCGTCTATAAACATGTACATACAAACAACATAATAGGTTGCAACTAA
                      ____________________________________________________________
consensus             TATACAAATCTAACCGTCTATAAACATGTACATACAAACAACATAATAGGTTGCAACTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          TTGATGATCTCTGGCTTACTGATATGCCCGCTCATCGTGGATTTGAATTTGGTGTTTGAA
JMFS121G07+           TTGATGATCTCTGGCTTACTGATATGCCCGCTCATCGTGGATTTGAATTTGGTGTTTGAA
                      ____________________________________________________________
consensus             TTGATGATCTCTGGCTTACTGATATGCCCGCTCATCGTGGATTTGAATTTGGTGTTTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047A07+          AGTTCTATTCCT                                                
JMFS121G07+           AGTTCTATTCCTGTTCTGGCGAACTCGTAACATGGTTGTGAATGTGGTATTTCTTATATT
                      ____________________________________________________________
consensus             AGTTCTATTCCTGTTCTGGCGAACTCGTAACATGGTTGTGAATGTGGTATTTCTTATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121G07+           TGTCAAAGATAACATATTACTTAATATTTTACTGTATATTTGAATTTAATTTGTACTTGT
                      ____________________________________________________________
consensus             TGTCAAAGATAACATATTACTTAATATTTTACTGTATATTTGAATTTAATTTGTACTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121G07+           ATGTATCGTTTACACTTTGAATTGCTXXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGT
                      ____________________________________________________________
consensus             ATGTATCGTTTACACTTTGAATTGCTNNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGT