Contig 003438:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS096F08Sequence616003438 (2)ref|XP_009360435.1|1e-120PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Pyrus x bre
JMSF010J15Sequence351003438 (2)ref|XP_010255472.1|4e-66PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Nelumbo nuc782013904 (2)ref|XP_007044457.1|2e-60WRKY domain class transcription factor [Theobroma cacao] gb|EOY00289.1| WRKY dom

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS096F08+                                                       CTACGATGATCCAGCG
                      ____________________________________________________________
consensus                                                         CTACGATGATCCAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS096F08+           ATTTATGATAGTTTTTAACGTAAATTTCGGCCCAGACTTTATTAAAGTCATAACGACACC
                      ____________________________________________________________
consensus             ATTTATGATAGTTTTTAACGTAAATTTCGGCCCAGACTTTATTAAAGTCATAACGACACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010J15+                                  TTCAATCGTGTTAGAATTACTGGCAGAGCAAGAGGTG
JMFS096F08+           TTGCCCACTCCTCTTGTTTCTGTTTCAATCGTGTTAGAATTACTGGCAGAGCAAGAGGTG
                      ____________________________________________________________
consensus             TTGCCCACTCCTCTTGTTTCTGTTTCAATCGTGTTAGAATTACTGGCAGAGCAAGAGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010J15+           CATTCTTCCTCAACACATCCATAACATCAAGCCCATGATCACCGTACAGGCGTTCAATAC
JMFS096F08+           CATTCTTCCTCAACACATCCATAACATCAAGCCCATGATCACCGTACAGGCGTTCAATAC
                      ____________________________________________________________
consensus             CATTCTTCCTCAACACATCCATAACATCAAGCCCATGATCACCGTACAGGCGTTCAATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010J15+           ATCTTAGGTTTAGAGCGGTGAGATAGTCTTCAACTCGAACGGGACTGTCGCTATTTATTG
JMFS096F08+           ATCTTAGGTTTAGAGCGGTGAGATAGTCTTCAACTCGAACGGGACTGTCGCTATTTATTG
                      ____________________________________________________________
consensus             ATCTTAGGTTTAGAGCGGTGAGATAGTCTTCAACTCGAACGGGACTGTCGCTATTTATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010J15+           TATTATCATTGATCCTGTCAAGCAATTCTTCAACACGTCTCGTAGTAACATTCACGGATT
JMFS096F08+           TATTATCATTGATCCTGTCAAGCAATTCTTCAACACGTCTCGTAGTAACATTCACGGATT
                      ____________________________________________________________
consensus             TATTATCATTGATCCTGTCAAGCAATTCTTCAACACGTCTCGTAGTAACATTCACGGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010J15+           CCAAAAGCATATCCAGCTCAAACCTGTCATCTTCACATCGAAACAAGCTCTCTTCGTATT
JMFS096F08+           CCAAAAGCATATCCAGCTCAAACCTGTCATCTTCACATCGAAACAAGCTCTCTTCGTATT
                      ____________________________________________________________
consensus             CCAAAAGCATATCCAGCTCAAACCTGTCATCTTCACATCGAAACAAGCTCTCTTCGTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010J15+           GGTTTTTCCGCATATGTTTGAAAGAGTAATCTTCACTCCCAGAAGTTACAGATACCCAAC
JMFS096F08+           GGTTTTTCCGCATATGTTTGAAAGAGTAATCTTCACTCCCAGAAGTTACAGATACCCAAC
                      ____________________________________________________________
consensus             GGTTTTTCCGCATATGTTTGAAAGAGTAATCTTCACTCCCAGAAGTTACAGATACCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010J15+           GATCATTCAATACC                                              
JMFS096F08+           GATCATTCAATACCTCTTTTCCTATCTCTGTTCTCTGGCTTGCTATTGGATTTGGATAAT
                      ____________________________________________________________
consensus             GATCATTCAATACCTCTTTTCCTATCTCTGTTCTCTGGCTTGCTATTGGATTTGGATAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS096F08+           TCTTTGGGAGAAGTCGATAACTGGGAGTGCAGCGTTCACAGTTAGAGAGGTCGAGTTCAT
                      ____________________________________________________________
consensus             TCTTTGGGAGAAGTCGATAACTGGGAGTGCAGCGTTCACAGTTAGAGAGGTCGAGTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS096F08+           GTATAGGTTTTGCAATATACTTATCCTTGCTTGAAAACATCTTCTGCCCATGTAATTCTT
                      ____________________________________________________________
consensus             GTATAGGTTTTGCAATATACTTATCCTTGCTTGAAAACATCTTCTGCCCATGTAATTCTT