| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS041H03 | Sequence | 638 | 003434 (6) | ref|XP_009797444.1| | 2e-63 | PREDICTED: protein STABILIZED1-like isoform X3 [Nicotiana sylvestris] | |||||
| JMFS055B06 | Sequence | 618 | 003434 (6) | ref|XP_009797444.1| | 3e-61 | PREDICTED: protein STABILIZED1-like isoform X3 [Nicotiana sylvestris] | |||||
| JMFS077B12 | Sequence | 642 | 003434 (6) | ref|XP_006357494.1| | 2e-67 | PREDICTED: pre-mRNA-processing factor 6-like [Solanum tuberosum] | |||||
| JMFS091E07 | Sequence | 616 | 003434 (6) | ref|XP_006357494.1| | 4e-71 | PREDICTED: pre-mRNA-processing factor 6-like [Solanum tuberosum] | |||||
| JMFS093C04 | Sequence | 605 | 003434 (6) | ref|XP_009797444.1| | 2e-61 | PREDICTED: protein STABILIZED1-like isoform X3 [Nicotiana sylvestris] | |||||
| JMSF012D12 | Sequence | 487 | 003434 (6) | ref|XP_009797444.1| | 8e-55 | PREDICTED: protein STABILIZED1-like isoform X3 [Nicotiana sylvestris] | 774 | 007553 (4) | ref|XP_006357494.1| | 2e-120 | PREDICTED: pre-mRNA-processing factor 6-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFS091E07+ TGNTCATCCTCATCATATTCTGCTGATGCAAAC
JMFS041H03+ TCATCATATTCTGCTGATGCAAAC
JMFS077B12+ CTGATGCAAAC
____________________________________________________________
consensus TGNTCATCCTCATCATATTCTGCTGATGCAAAC
. : . : . : . : . : . :
JMFS091E07+ AACCCAACATCATTTCCTTCAAACTAATCAAACTTCTGATTCTCATCATACCCCTTGTCA
JMFS041H03+ AACCCAACATCATTTCCTTCAAACTCATCAAACTTCTGATTCTCATCATACCCCTTGTCA
JMFS077B12+ AACCCAACATCATTTCCTTCAAACTCATCAAACTTCTGATTCTCATCATACCCCTTGTCA
JMFS055B06+ GATTCTCATCATACCCCTTGTCA
JMFS093C04+ TGTCA
____________________________________________________________
consensus AACCCAACATCATTTCCTTCAAACTCATCAAACTTCTGATTCTCATCATACCCCTTGTCA
. : . : . : . : . : . :
JMFS091E07+ TCACTCTCATCCTCTTCATCTTCTTCACCGCCTCCCTTCCCCCGGCCACGACCAACCCCT
JMFS041H03+ TCACTCTCATCCTATTCATCTTCTTCACCGCCTCCCTTCCCCCGGCCACGACCAACCCCT
JMFS077B12+ TCACTCTCATCCTCTTCATCTTCTTCACCGCCTCCCTTCCCCCGGCCACGACCAACCCCT
JMFS055B06+ TCACTCTCATCCTCTTCATC-TGTTCACCGCCTCCCTTCCCCCGGCCACGACCAACCCCT
JMFS093C04+ TCACTCTCATCCTCTTCATCTTCTTCACCGCCTCCCTTCCCCCGGCCACGACCAACCCCT
____________________________________________________________
consensus TCACTCTCATCCTCTTCATCTTCTTCACCGCCTCCCTTCCCCCGGCCACGACCAACCCCT
. : . : . : . : . : . :
JMFS091E07+ GTGGCTGCAGCACCGCCAATGGCCGATCTATCCGGAAGATCTGGGGCAGCTCTAGCCGGC
JMFS041H03+ GTGGCTGCAGCACCGCCAATGGCCGA--TATCCGGAAGATCTGGGGCAGCTCTAGCCGGC
JMFS077B12+ GTGGCTGCAGCACCGCCAATGGCCGATCTATCCGGAAGATCTGGGGCAGCTCTAGCCGGC
JMFS055B06+ GTGGCTGCAGCACCGCCAATGGCCGATCTATCCGGAAGATCTGGGGCAGCTCTAGCCGGC
JMSF012D12+ CTCTAGCCGGC
JMFS093C04+ GTGGCTGCAGCACCGCCAATGGCCGATCTATCCGGAAGATCTGGGGCAGCTCTAGCCGGC
____________________________________________________________
consensus GTGGCTGCAGCACCGCCAATGGCCGATCTATCCGGAAGATCTGGGGCAGCTCTAGCCGGC
. : . : . : . : . : . :
JMFS091E07+ CCAATATCAGACCTGGTGGTGAAACCAGTGGCACCACGACCAAGCCCGGCGACATAATTG
JMFS041H03+ CCAATATCAGACCTGGTGGTGAAACCAGTGGCACCACGACCAAGCCCGGCGACATAATTG
JMFS077B12+ CCAATATCAGACCTGGTGGTGAAACCAGTGGCACCACGACCAAGCCCGGCGACATAATTG
JMFS055B06+ CCAATATCAGACCTGGTGGTGAAACCAGTGGCACCACGACCAAGCCCGGCGACATAATTG
JMSF012D12+ CCAATATCAGACCTGGTGGTGAAACCAGTGGCACCACGACCAAGCCCGGCGACATAATTG
JMFS093C04+ CCAATATCAGACCTGGTGGTGAAACCAGTGGCACCACGACCAAGCCCGGCGACATAATTG
____________________________________________________________
consensus CCAATATCAGACCTGGTGGTGAAACCAGTGGCACCACGACCAAGCCCGGCGACATAATTG
. : . : . : . : . : . :
JMFS091E07+ GCAGGAGGTTTGGTACTAAGAAAATCAAGCCTGGTCTTGGGTGGCACAGGTGCCTGCATC
JMFS041H03+ GCAGGAGGTTTGGTACTAAGAAAATCAAGCCTGGTCTTGGGTGGCACAGGTGCCTGCATC
JMFS077B12+ GCAGGAGGTTTGGTACTAAGAAAATCAAGCCTGGTCTTGGGTGGCACAGGTGCCTGCATC
JMFS055B06+ GCAGGAGGTTTGGTACTAAGAAAATCAAGCCTGGTCTTGGGTGGCACAGGTGCCTGCATC
JMSF012D12+ GCAGGAGGTTTGGTACTAAGAAAATCAAGCCTGGTCTTGGGTGGCACAGGTGCCTGCATC
JMFS093C04+ GCAGGAGGTTTGGTACTAAGAAAATCAAGCCTGGTCTTGGGTGGCACAGGTGCCTGCATC
____________________________________________________________
consensus GCAGGAGGTTTGGTACTAAGAAAATCAAGCCTGGTCTTGGGTGGCACAGGTGCCTGCATC
. : . : . : . : . : . :
JMFS091E07+ CCGCCAAGCAGAGGGACATGTAGGGTTAGCGTGGAATTGGGAGAAACACCGAGATGGGAG
JMFS041H03+ CCGCCAAGCAGAGGGACATGTAGGGTTAGCGTGGAATTGGGAGAAACACCGAGATGGGAG
JMFS077B12+ CCGCCAAGCAGAGGGACATGTAGGGTTAGCGTGGAATTGGGAGAAACACCGAGATGGGAG
JMFS055B06+ CCGCCAAGCAGAGGGACATGTAGGGTTAGCGTGGAATTGGGAGAAACACCGAGATGGGAG
JMSF012D12+ CCGCCAAGCAGAGGGACATGTAGGGTTAGCGTGGAATTGGGAGAAACACCGAGATGGGAG
JMFS093C04+ CCGCCAAGCAGAGGGACATGTAGGGTTAGCGTGGAATTGGGAGAAACACCGAGATGGGAG
____________________________________________________________
consensus CCGCCAAGCAGAGGGACATGTAGGGTTAGCGTGGAATTGGGAGAAACACCGAGATGGGAG
. : . : . : . : . : . :
JMFS091E07+ ATGGGGACGGCGCCGTCGATGAGGCGGCGGCAGCCGAGGAAGAGTCGTTGACTGGGGAGG
JMFS041H03+ ATGGGGACGGCGCCGTCGATGAGGCGGCGGCAGCCGAGGAAGAGTCGTTGACTGGGGAGG
JMFS077B12+ ATGGGGACGGCGCCGTCGATGAGGCGGCGGCAGCCGAGGAAGAGTCGTTGACTGGGGAGG
JMFS055B06+ ATGGGGACGGCGCCGTCGATGAGGCGGCGGCAGCCGAGGAAGAGTCGTTGACTGGGGAGG
JMSF012D12+ ATGGGGACGGCGCCGTCGATGAGGCGGCGGCAGCCGAGGAAGAGTCGTTGACTGGGGAGG
JMFS093C04+ ATGGGGACGGCGCCGTCGATGAGGCGGCGGCAGCCGAGGAAGAGTCGTTGACTGGGGAGG
____________________________________________________________
consensus ATGGGGACGGCGCCGTCGATGAGGCGGCGGCAGCCGAGGAAGAGTCGTTGACTGGGGAGG
. : . : . : . : . : . :
JMFS091E07+ GGTATGTGGTAAGTTTCATGGATTTTGAGGGTCAGTGATTGAAGAGTGGTTGTGGAGGGG
JMFS041H03+ GGTATGTGGTAAGTTTCATGGATTTTGAGGGTCAGTGATTGAAGAGTGGTTGTGGAGGGG
JMFS077B12+ GGTATGTGGTAAGTTTCATGGATTTTGAGGGTCAGTGATTGAAGAGTGGTTGTGGAGGGG
JMFS055B06+ GGTATGTGGTAAGTTTCATGGATTTTGAGGGTCAGTGATTGAAGAGTGGTTGTGGAGGGG
JMSF012D12+ GGTATGTGGTAAGTTTCATGGATTTTGAGGGTCAGTGATTGAAGAGTGGTTGTGGAGGGG
JMFS093C04+ GGTATGTGGTAAGTTTCATGGATTTTGAGGGTCAGTGATTGAAGAGTGGTTGTGGAGGGG
____________________________________________________________
consensus GGTATGTGGTAAGTTTCATGGATTTTGAGGGTCAGTGATTGAAGAGTGGTTGTGGAGGGG
. : . : . : . : . : . :
JMFS091E07+ TTTACATCTAGAGCTAGGGTTCCATTATCGGGAGTTTTTATGAAAACCATTTCTGAGAAA
JMFS041H03+ TTTACATCTAGAGCTAGGGTTCCATTATCGGGAGTTTTTATGAAAACCATTTCTGAGAAA
JMFS077B12+ TTTACATCTAGAGCTAGGGTTCCATTATCGGGAGTTTTTATGAAAACCATTTCTGAGAAA
JMFS055B06+ TTTACATCTAGAGCTAGGGTTCCATTATCGGGAGTTTTTATGAAAACCATTTCTGAGAAA
JMSF012D12+ TTTACATCTAGAGCTAGGGTTCCATTATCGGGAGTTTTTATGAAAACCATTTCTGAGAAA
JMFS093C04+ TTTACATCTAGAGCTAGGGTTCCATTATCGGGAGTTTTTATGAAAACCATTTCTGAGAAA
____________________________________________________________
consensus TTTACATCTAGAGCTAGGGTTCCATTATCGGGAGTTTTTATGAAAACCATTTCTGAGAAA
. : . : . : . : . : . :
JMFS091E07+ TTGAAATAGGAATTCGAAGGAAAAGAGAGTACGAAATGAAAGA
JMFS041H03+ TTGAAATAGGAATTCGAAGGAAAAGAGAGTACGAAATGAAAGAGATTTAACCTGAGAATC
JMFS077B12+ TTGAAATAGGAATTCGAAGGAAAAGAGAGTACGAAATGAAAGAGATTTAACCTGAGAATC
JMFS055B06+ TTGAAATAGGAATTCGAAGGAAAAGAGAGTACGAAATGAAAGAGATTTAACCTGAGAATC
JMSF012D12+ TTGAAATAGGAATTCGAAGGAAAAGAGAGTACGAAATGAAAGAGATTTAACCTGAGAATC
JMFS093C04+ TTGAAATAGGAATTCGAAGGAAAAGAGAGTACGAAATGAAAGAGATTTAACCTGAGAATC
____________________________________________________________
consensus TTGAAATAGGAATTCGAAGGAAAAGAGAGTACGAAATGAAAGAGATTTAACCTGAGAATC
. : . : . : . : . : . :
JMFS041H03+ AGTCCTTCAAAGTTCA
JMFS077B12+ AGTCCTTCAAAGTTCAAAACCAGGGGAAGAA
JMFS055B06+ AGTCCTTCAAAGTTCAAAACCAGGGGAAGAAGCACTGCCTTCACAGCTTCACA
JMSF012D12+ AGTCCTTCAAAGTTCAAAACCAGGGGAAGAAGCACTGCCTTCACAGCTTCACA
JMFS093C04+ AGTCCTTCAAAGTTCAAAACCAGGGGAAGAAGCACTGCCTTCACAGCTTCACACCGCTGC
____________________________________________________________
consensus AGTCCTTCAAAGTTCAAAACCAGGGGAAGAAGCACTGCCTTCACAGCTTCACACCGCTGC