Contig 003394:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS039H04Sequence662003394 (2)ref|XP_009768809.1|2e-120PREDICTED: protein SHOOT GRAVITROPISM 6 [Nicotiana sylvestris]
JMFS075C08Sequence627003394 (2)ref|XP_009768809.1|4e-118PREDICTED: protein SHOOT GRAVITROPISM 6 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS039H04+ AG
                      ____________________________________________________________
consensus AG
 
. : . : . : . : . : . :
JMFS075C08+ CTATACTGCCAGCAGGCCTGACACCAACATTTAAATGCATTTGCAAA
JMFS039H04+ TGAGAAATCCACGCTATACTGCCAGCAGGCCTGACACCAACATTTAAATGCATTTGCAAA
                      ____________________________________________________________
consensus TGAGAAATCCACGCTATACTGCCAGCAGGCCTGACACCAACATTTAAATGCATTTGCAAA
 
. : . : . : . : . : . :
JMFS075C08+ GATTGGCCTGTATATTTCTCTCACATTCCCAAGAATGGGTACGACTCGTGCAAGAACACC
JMFS039H04+ GATTGGCCTGTATATTTCTCTCACATTCCCAAGAATGGGTACGACTCGTGCAAGAACACC
                      ____________________________________________________________
consensus GATTGGCCTGTATATTTCTCTCACATTCCCAAGAATGGGTACGACTCGTGCAAGAACACC
 
. : . : . : . : . : . :
JMFS075C08+ TTTTAATCGTGGAGTAAACTGCAAAGCATCAGATGATGCATAGTCTGCAAGTATTTGAAC
JMFS039H04+ TTTTAATCGTGGAGTAAACTGCAAAGCATCAGATGATGCATAGTCTGCAAGTATTTGAAC
                      ____________________________________________________________
consensus TTTTAATCGTGGAGTAAACTGCAAAGCATCAGATGATGCATAGTCTGCAAGTATTTGAAC
 
. : . : . : . : . : . :
JMFS075C08+ CATTGCAGGTAGAGCTGAATTTGAACCAGAGAAATGGAGAAATATTTCTTCCATCATTAG
JMFS039H04+ CATTGCAGGTAGAGCTGAATTTGAACCAGAGAAATGGAGAAATATTTCTTCCATCATTAG
                      ____________________________________________________________
consensus CATTGCAGGTAGAGCTGAATTTGAACCAGAGAAATGGAGAAATATTTCTTCCATCATTAG
 
. : . : . : . : . : . :
JMFS075C08+ ATCAGGAAGATGTGAACCAACTGATACGAGGACACCAGCAGCAGCTCTTTGCCAATCAGC
JMFS039H04+ ATCAGGAAGATGTGAACCAACTGATACGAGGACACCAGCAGCAGCTCTTTGCCAATCAGC
                      ____________________________________________________________
consensus ATCAGGAAGATGTGAACCAACTGATACGAGGACACCAGCAGCAGCTCTTTGCCAATCAGC
 
. : . : . : . : . : . :
JMFS075C08+ ATTCAATTCCTTTGTTGAAATGACCTCAGCTGTTGCAATCTTGGCAAGCTTCATCATGAA
JMFS039H04+ ATTCAATTCCTTTGTTGAAATGACCTCAGCTGTTGCAATCTTGGCAAGCTTCATCATGAA
                      ____________________________________________________________
consensus ATTCAATTCCTTTGTTGAAATGACCTCAGCTGTTGCAATCTTGGCAAGCTTCATCATGAA
 
. : . : . : . : . : . :
JMFS075C08+ AGCAGGATCTACATCCCCCTTATCCAAGGCACGAATTGCCACGGATATTACTTGAAATAA
JMFS039H04+ AGCAGGATCTACATCCCCCTTATCCAAGGCACGAATTGCCACGGATATTACTTGAAATAA
                      ____________________________________________________________
consensus AGCAGGATCTACATCCCCCTTATCCAAGGCACGAATTGCCACGGATATTACTTGAAATAA
 
. : . : . : . : . : . :
JMFS075C08+ ACCAGCTATATTCCCAAACCTCCGGCGTCCACCTCTAGAAACAGTTAGGCAGCAATCAAG
JMFS039H04+ ACCAGCTATATTCCCAAACCTCCGGCGTCCACCTCTAGAAACAGTTAGGCAGCAATCAAG
                      ____________________________________________________________
consensus ACCAGCTATATTCCCAAACCTCCGGCGTCCACCTCTAGAAACAGTTAGGCAGCAATCAAG
 
. : . : . : . : . : . :
JMFS075C08+ AACCAGAAGTGGGTTCAAGGAAGTAATATCCTTGAGAGCAGACATGGAGGCTTCTCTGAC
JMFS039H04+ AACCAGAAGTGGGTTCAAGGAAGTAATATCCTTGAGAGCAGACATGGAGGCTTCTCTGAC
                      ____________________________________________________________
consensus AACCAGAAGTGGGTTCAAGGAAGTAATATCCTTGAGAGCAGACATGGAGGCTTCTCTGAC
 
. : . : . : . : . : . :
JMFS075C08+ CGAGGGAGAGTCATCAGCTAAAGATGAGACCATAACTTGAACTGCCTCGGAAGCAGGAAT
JMFS039H04+ CGAGGGAGAGTCATCAGCTAAAGATGAGACCATAACTTGAACTGCCTCGGAAGCAGGAAT
                      ____________________________________________________________
consensus CGAGGGAGAGTCATCAGCTAAAGATGAGACCATAACTTGAACTGCCTCGGAAGCAGGAAT
 
. : . : . : . : . : . :
JMFS075C08+ GGAGTCACCGGAGCTAGAAGCAGCCAT
JMFS039H04+ GGAGTCACCGGAGCTAGAAGCAGCCATAATTGGAAGGAAGAAGACCGATCACCGGAGAAG
                      ____________________________________________________________
consensus GGAGTCACCGGAGCTAGAAGCAGCCATAATTGGAAGGAAGAAGACCGATCACCGGAGAAG