Contig 003362:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS003B10Sequence567003362 (5)ref|XP_006361134.1|1e-24PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum]
JMFS013H07Sequence613003362 (5)ref|XP_006361134.1|5e-32PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum]
JMFS068G02Sequence582003362 (5)ref|XP_006361134.1|5e-29PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum]
JMFS164G09Sequence608003362 (5)ref|XP_006361134.1|4e-33PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum]
JMSF051K10Sequence681003362 (5)ref|XP_006361134.1|2e-50PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum] 765014128 (2)ref|XP_009609281.1|2e-83PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3 [Nicotiana tomentosiformi

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF051K10+ TTGTCATAG
                      ____________________________________________________________
consensus TTGTCATAG
 
. : . : . : . : . : . :
JMSF051K10+ CCGTATGCCTGTGTGCTCTCAGGTAATGCACATTATTGGGACTCTCAATGGAATGGCTGT
                      ____________________________________________________________
consensus CCGTATGCCTGTGTGCTCTCAGGTAATGCACATTATTGGGACTCTCAATGGAATGGCTGT
 
. : . : . : . : . : . :
JMSF051K10+ GATCCNTCAGAAATTTTGTCACAACCCATTTGTTTTTACCCTTTAGCTCTATTCTAAGCA
JMFS068G02+ TAAGCA
JMFS164G09+ CCTTTAGCTCTATTCTAAGCA
JMFS013H07+ CCTTTAGCTCTATTCTAAGCA
                      ____________________________________________________________
consensus GATCCNTCAGAAATTTTGTCACAACCCATTTGTTTTTACCCTTTAGCTCTATTCTAAGCA
 
. : . : . : . : . : . :
JMSF051K10+ TAGCACCACAGGTTTCCCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
JMFS068G02+ TAGCACCACAGGTTTCNCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
JMFS164G09+ TAGCACCACAGGTTTCNCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
JMFS013H07+ TAGCACCACAGGTTTCCCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
JMFS003B10+ TTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
                      ____________________________________________________________
consensus TAGCACCACAGGTTTCCCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
 
. : . : . : . : . : . :
JMSF051K10+ GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
JMFS068G02+ GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
JMFS164G09+ GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
JMFS013H07+ GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
JMFS003B10+ GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
                      ____________________________________________________________
consensus GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
 
. : . : . : . : . : . :
JMSF051K10+ CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
JMFS068G02+ CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
JMFS164G09+ CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
JMFS013H07+ CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
JMFS003B10+ CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
                      ____________________________________________________________
consensus CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
 
. : . : . : . : . : . :
JMSF051K10+ TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
JMFS068G02+ TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
JMFS164G09+ TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
JMFS013H07+ TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
JMFS003B10+ TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
                      ____________________________________________________________
consensus TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
 
. : . : . : . : . : . :
JMSF051K10+ CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
JMFS068G02+ CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
JMFS164G09+ CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
JMFS013H07+ CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
JMFS003B10+ CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
                      ____________________________________________________________
consensus CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
 
. : . : . : . : . : . :
JMSF051K10+ CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
JMFS068G02+ CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
JMFS164G09+ CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
JMFS013H07+ CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
JMFS003B10+ CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
                      ____________________________________________________________
consensus CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
 
. : . : . : . : . : . :
JMSF051K10+ ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
JMFS068G02+ ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
JMFS164G09+ ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
JMFS013H07+ ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
JMFS003B10+ ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
                      ____________________________________________________________
consensus ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
 
. : . : . : . : . : . :
JMSF051K10+ AAACCCTGCATAACTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
JMFS068G02+ AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
JMFS164G09+ AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
JMFS013H07+ AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
JMFS003B10+ AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGCATTGGAGA
                      ____________________________________________________________
consensus AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
 
. : . : . : . : . : . :
JMSF051K10+ CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
JMFS068G02+ CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
JMFS164G09+ CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
JMFS013H07+ CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
JMFS003B10+ CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
                      ____________________________________________________________
consensus CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
 
. : . : . : . : . : . :
JMSF051K10+ GTTAGGGCA
JMFS068G02+ GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAA
JMFS164G09+ GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAAGGAAAGCGG
JMFS013H07+ GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAAGGAAAGCGG
JMFS003B10+ GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAAGGAAAGCGGGAAGAGA
                      ____________________________________________________________
consensus GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAAGGAAAGCGGGAAGAGA