clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN015B22 | Sequence | 566 | 003352 (4) | ref|NP_001233886.1| | 1e-18 | AP2 transcription factor SlAP2c [Solanum lycopersicum] gb|AEF28820.1| AP2 transc | |||||
JMFN042F09 | Sequence | 620 | 003352 (4) | ref|XP_009589846.1| | 3e-106 | PREDICTED: floral homeotic protein APETALA 2 [Nicotiana tomentosiformis] | |||||
JMSF025G19 | Sequence | 685 | 019997 | gb|AIS71911.1| | 9e-23 | AP2 transcription factor SlAP2c [Nicotiana tabacum] | 785 | 003352 (4) | ref|XP_009589846.1| | 2e-54 | PREDICTED: floral homeotic protein APETALA 2 [Nicotiana tomentosiformis] |
JMSF027F02 | Sequence | 598 | 005122 (2) | emb|CDP02515.1| | 6e-14 | unnamed protein product [Coffea canephora] | 692 | 003352 (4) | ref|NP_001233886.1| | 2e-36 | AP2 transcription factor SlAP2c [Solanum lycopersicum] gb|AEF28820.1| AP2 transc |
This contig is upended
. : . : . : . : . : . :
rJMSF027F02- CATTCTCAGATAACATCAATTCCTTGAGGTTTTCAAGGTT
JMFN015B22+ CATTCTCAGATAACATCAATTCCTTGAGGTTTTCAAGGTT
rJMSF025G19- GTGGCAGTACATTCTCAGATAACATCAATTCCTTGAGGTTTTCAAGGTT
____________________________________________________________
consensus GTGGCAGTACATTCTCAGATAACATCAATTCCTTGAGGTTTTCAAGGTT
. : . : . : . : . : . :
rJMSF027F02- ACAATATAATAAAGACAATAATAATGTATCCTTAAAAATGTAATTGGATAGGATCAATAA
JMFN015B22+ ACAATATAATAAAGCCAATAATAATGTATCCTTAAAAATGTAATTGGATAGGATCAATAA
rJMSF025G19- ACAATATAATAAAGACAATAATAATGTATCCTTAAAAATGTAATTGGATAGGATCAATAA
____________________________________________________________
consensus ACAATATAATAAAGACAATAATAATGTATCCTTAAAAATGTAATTGGATAGGATCAATAA
. : . : . : . : . : . :
rJMSF027F02- TTCAAGGAGGTCTCATGAAAGAGTAGTGGAAGCCATTATTTTTGTGATGAGGCCAATTCT
JMFN015B22+ TTCAAGGAGGTCTCATGAAAGAGTAGTGGAAGCCATTATTTTTGTGATGAGGCCAATTCT
rJMSF025G19- TTCAAGGAGGTCTCATGAAAGAGTAGTGGAAGCCATTATTTTTGTGATGAGGCCAATTCT
____________________________________________________________
consensus TTCAAGGAGGTCTCATGAAAGAGTAGTGGAAGCCATTATTTTTGTGATGAGGCCAATTCT
. : . : . : . : . : . :
rJMSF027F02- GAGGTCTTAAGGTCTGCTGAGGGAATCCTGATGATGCTGCAGCAGTTGTTGCAAATAGCT
JMFN015B22+ GAGGTCTTAAGGTCTGCTGAGGGAATCCTGATGATGCTGCAGCAGTTGTTGCAAATAGCT
rJMSF025G19- GAGGTCTTAAGGTCTGCTGAGGGAATCCTGATGATGCTGCAGCAGTTGTTGCAAATAGCT
____________________________________________________________
consensus GAGGTCTTAAGGTCTGCTGAGGGAATCCTGATGATGCTGCAGCAGTTGTTGCAAATAGCT
. : . : . : . : . : . :
rJMSF027F02- GAGGGGGAGGGGGGTTTGATGGGTGCCATTGCGGAATGTGGTTGCTGCTCGTTGTGGTCG
JMFN015B22+ GAGGGGGAGGGGGGTTTGATGGGTGCCATTGCGGAATGTGGTTGCTGCTCGTTATGGTCG
rJMSF025G19- GAGGGGGAGGGGGGTTTGATGGGTGCCATTGCGGAATGTGGTTGCTGCTCGTTGTGGTCG
____________________________________________________________
consensus GAGGGGGAGGGGGGTTTGATGGGTGCCATTGCGGAATGTGGTTGCTGCTCGTTGTGGTCG
. : . : . : . : . : . :
rJMSF027F02- AGAGCGATAGGTCCCCGATGCCCCCCCATCCAATTCGTCCCCCGCTGTTACTGCTGCTGG
JMFN015B22+ AGAGCGATAGGTCCCCGATGCCCCCCCATCCAATTCGTCCCCCGCTGTTACTGCTGCTGG
rJMSF025G19- AGAGCGATAGGTCCCCGATGCCCCCCCATCCAATTCGTCCCCCGCTGTTACTGCTGCTGG
____________________________________________________________
consensus AGAGCGATAGGTCCCCGATGCCCCCCCATCCAATTCGTCCCCCGCTGTTACTGCTGCTGG
. : . : . : . : . : . :
rJMSF027F02- GAAATTGATAGCTGGGTGAGCTCAAGTGTGGCGAAAACATTTGCAGCATGTGGGATTCGC
JMFN015B22+ GAAATTGATAGCTGGGTGAGCTCAAGTGTGGCGAAAACATTTGCAGCATGTGGGATTCGC
rJMSF025G19- GAAATTGATAGCTGGGTGAGCTCAAGTGTGGCGAAAACATTTGCAGCATGTGGGATTCGC
____________________________________________________________
consensus GAAATTGATAGCTGGGTGAGCTCAAGTGTGGCGAAAACATTTGCAGCATGTGGGATTCGC
. : . : . : . : . : . :
rJMSF027F02- CACCCGGTTTCACAAAATGACCATATGTANAGTGGATTTGGTCATTGCTAGCAGGCGAAT
JMFN015B22+ CACCCGGTTTCACAAAATGACCATATGTAGAGTGGATTTGGTCATTGCTAGCAGGCGAAT
rJMSF025G19- CACCCGGTTTCACAAAATGACCATATGTAGAGTGGATTTGGTCATTGCTAGCAGGCGAAT
JMFN042F09+ GATTTGGTCATTGCTAGCAGGCGAAT
____________________________________________________________
consensus CACCCGGTTTCACAAAATGACCATATGTAGAGTGGATTTGGTCATTGCTAGCAGGCGAAT
. : . : . : . : . : . :
rJMSF027F02- GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
JMFN015B22+ GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
rJMSF025G19- GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
JMFN042F09+ GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
____________________________________________________________
consensus GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
. : . : . : . : . : . :
rJMSF027F02- GCTCACCTGGAATCGCCTGTTGCTTATTAGACACTACTGCTGGCTGCCTCCAGTCCATCT
JMFN015B22+ GCTCACCTGGAATCGC------CT
rJMSF025G19- GCTCACCTGGAATCGC------CTTATTAGACACTACTGCTGGCTGCCTCCAGTCCATCT
JMFN042F09+ GCTCACCTGGAATCGC------CTTATTAGACACTACTGCTGGCTGCCTCCAGTCCATCT
____________________________________________________________
consensus GCTCACCTGGAATCGC------CTTATTAGACACTACTGCTGGCTGCCTCCAGTCCATCT
. : . : . : . : . : . :
rJMSF027F02- CAAACTGCATTGCAGATGAGTTGTGACCCACATTTTCTTCACCTTGCTTCGAGCTCGAGC
rJMSF025G19- CAAACTGCATTGCAGATGAGTTGTGACCCACATTTTCTTCACCTTGCTTCGAGCTCGAGC
JMFN042F09+ CAAACTGCATTGCAGATGAGTTGTGACCCACATTTTCTTCACCTTGCTTCGAGCTCGAGC
____________________________________________________________
consensus CAAACTGCATTGCAGATGAGTTGTGACCCACATTTTCTTCACCTTGCTTCGAGCTCGAGC
. : . : . : . : . : . :
rJMSF027F02- TCCCCAGGCTCAAATCGAGATTGTGATCAGCTGCATTCTCACAAGTCTCAGT
rJMSF025G19- TCCCCAGGCTCAAATCGAGATTGTGATCAGCTGCATTCTCACAAGTCTCAGTCGCGGAAC
JMFN042F09+ TCCCCAGGCTCAAATCGAGATTGTGATCAGCTGCATTCTCACAAGTCTCAGTCGCGGAAC
____________________________________________________________
consensus TCCCCAGGCTCAAATCGAGATTGTGATCAGCTGCATTCTCACAAGTCTCAGTCGCGGAAC
. : . : . : . : . : . :
rJMSF025G19- TAAGTTCATTCTCATATATACTGGGATCAAAATTTGTAACTGCATCCTTGCCATTGCATT
JMFN042F09+ TAAGTTCATTCTCATATATACTGGGATCAAAATTTGTAACTGCATCCTTGCCATTGCATT
____________________________________________________________
consensus TAAGTTCATTCTCATATATACTGGGATCAAAATTTGTAACTGCATCCTTGCCATTGCATT
. : . : . : . : . : . :
rJMSF025G19- TTATGGCAGCTTTATCATAAGC
JMFN042F09+ TTATGGCAGCTTTATCATAAGCCCTGGCAGCTTCAATTTCAGTATCAAAGAGACCCAGAT
____________________________________________________________
consensus TTATGGCAGCTTTATCATAAGCCCTGGCAGCTTCAATTTCAGTATCAAAGAGACCCAGAT
. : . : . : . : . : . :
JMFN042F09+ AAACATACTTTTTCCCCAGGAATTGGCCCATTCTAGCCTCCCATCTACCGCATTTATGCA
____________________________________________________________
consensus AAACATACTTTTTCCCCAGGAATTGGCCCATTCTAGCCTCCCATCTACCGCATTTATGCA
. : . : . : . : . : . :
JMFN042F09+ AAGTGACGCCTCTATATTTGGAACTCCCCCGGGGAAAGCCGGTGCTTTGTCGCCGGAGAA
____________________________________________________________
consensus AAGTGACGCCTCTATATTTGGAACTCCCCCGGGGAAAGCCGGTGCTTTGTCGCCGGAGAA
. : . : . : . : . : . :
JMFN042F09+ CATGGACGAATTCTTCCTTGGTTAAATTGCTCATCTGTTTTAAGTCGTCTTCGTAATCTT
____________________________________________________________
consensus CATGGACGAATTCTTCCTTGGTTAAATTGCTCATCTGTTTTAAGTCGTCTTCGTAATCTT
. : . : . : . : . : . :
JMFN042F09+ CAAGGCTGAAATTTATGTCGGCTTCCACTCCCCGGAACTTGATTGCTGCCCTATCGTATG
____________________________________________________________
consensus CAAGGCTGAAATTTATGTCGGCTTCCACTCCCCGGAACTTGATTGCTGCCCTATCGTATG