Contig 003335:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011B22Sequence635003335 (4)ref|XP_006342278.1|181PREDICTED: uncharacterized protein LOC102593420 [Solanum tuberosum]
JMFN025J03Sequence603003335 (4)
JMSF001C09Sequence226003499 (6)773003335 (4)ref|XP_006363000.1|99.4PREDICTED: uncharacterized protein LOC102589507 [Solanum tuberosum]
JMSF046H19Sequence743003499 (6)emb|CDP20584.1|7e-46unnamed protein product [Coffea canephora]653003335 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN011B22- GTCATCAG
                      ____________________________________________________________
consensus GTCATCAG
 
. : . : . : . : . : . :
JMFN011B22- ATTGGAATAGAGCAACCCCAGATGAAGTGAGGCACCAGTATGAGATGGTGGAGATTCTTG
                      ____________________________________________________________
consensus ATTGGAATAGAGCAACCCCAGATGAAGTGAGGCACCAGTATGAGATGGTGGAGATTCTTG
 
. : . : . : . : . : . :
JMFN011B22- ATGGATATTCTGAAGAGTTTGGTGTCCATGTTGCCCCTTTGATAAAATTAGGCAGGTTCA
                      ____________________________________________________________
consensus ATGGATATTCTGAAGAGTTTGGTGTCCATGTTGCCCCTTTGATAAAATTAGGCAGGTTCA
 
. : . : . : . : . : . :
JMFN011B22- AGACAGTTTACAGAAGGAACTCAGACCAGGGGGCCAGTCGGTGGATTCCAAAAAGAGAGA
rJMSF001C09+ GCCAGTCGGTGGATTCCCAAAAGAGAGA
                      ____________________________________________________________
consensus AGACAGTTTACAGAAGGAACTCAGACCAGGGGGCCAGTCGGTGGATTCCCAAAAGAGAGA
 
. : . : . : . : . : . :
JMFN011B22- TGTTGCGATTTTCACACATGGTTCCTTCTTGTTTACTGAAAGAAGGTCCTAACCTGCCAG
rJMSF001C09+ TGTTGCGATTTTCACACATGGTTCCTTCTTGTTTACTGAAAGAAGGTCCTAACCTGCCAG
                      ____________________________________________________________
consensus TGTTGCGATTTTCACACATGGTTCCTTCTTGTTTACTGAAAGAAGGTCCTAACCTGCCAG
 
. : . : . : . : . : . :
JMFN011B22- ATGGATGCTGGGATCTTGACCCTGCTGCAACCCCAGAAGAACTTCTCCAGGGAGCAAATC
rJMSF046H19+ CCCCAGAAGAACTTCTCCAGGGAGCAAATC
rJMSF001C09+ ATGGATGCTGGGATCTTGACCCTGCTGCAACCCCAGAAGAACTTCTCCAGGGAGCAAATC
                      ____________________________________________________________
consensus ATGGATGCTGGGATCTTGACCCTGCTGCAACCCCAGAAGAACTTCTCCAGGGAGCAAATC
 
. : . : . : . : . : . :
JMFN011B22- ATGTAGAGGATG-AAAGTCATGCTGGAAACAATAATGCAGATGAACATTCCAAGAATAAA
rJMSF046H19+ ATGTAGAGGATGAAAAGTCATGCTGGAAACAATAATGCAGATGAACATTCCAAGAATAAA
rJMSF001C09+ ATGTAGAGGATG-AAAGTCATGCTGGAAACAATAATGCAGATGAACATTCCAAGAATAAA
JMFN025J03- TAAA
                      ____________________________________________________________
consensus ATGTAGAGGATG-AAAGTCATGCTGGAAACAATAATGCAGATGAACATTCCAAGAATAAA
 
. : . : . : . : . : . :
JMFN011B22- ATAGAACACAGGGCTGAAGAGAAGATAGGGCAAGCAGAAAGCACAGTACTTCCAGGTAAG
rJMSF046H19+ ATAGAACACAGGGCTGAAGAGAAGATAGGGCAAGCAGAAAGCACAGTACTTCCAGGTAAG
rJMSF001C09+ ATAGAACACAGGGCTGAAGAGAAGATAGGGCAAGCAGAAAGCACAGTACTTCCAGGTAAG
JMFN025J03- ATAGAACACAGGGCTGAAGAGAAGATAGGGCAAGCAGAAAGCACAGTACTTCCAGGTAAG
                      ____________________________________________________________
consensus ATAGAACACAGGGCTGAAGAGAAGATAGGGCAAGCAGAAAGCACAGTACTTCCAGGTAAG
 
. : . : . : . : . : . :
JMFN011B22- TCTCATGAATCTGTTAGTGGAGTGCAGGTTCAAGATATCCCAAATCAAGCACAAAACCCT
rJMSF046H19+ TCTCATGAATCTGTTAGTGGAGTGCAGGTTCAAGATATCCCAAATCAAGCACAAAACCCT
rJMSF001C09+ TCTCATGAATCTGTTAGTGGAGTGCAGGTTCAAGATATCCCAAATCAAGCACAAAACCCT
JMFN025J03- TCTCATGAATCTGTTAGTGGAGTGCAGGTTCAAGATATCCCAAATCAAGCACAAAACCCT
                      ____________________________________________________________
consensus TCTCATGAATCTGTTAGTGGAGTGCAGGTTCAAGATATCCCAAATCAAGCACAAAACCCT
 
. : . : . : . : . : . :
JMFN011B22- CCTGAACCTCCTCCTGGGTTTCCTGTCATCCCAAATCAAGCACAAAACCCTCCCGAACCT
rJMSF046H19+ CCTGAACCTCCTCCTGGGTTTCCTGTCATCCCAAATCAAGCACAAAACCCTCCCGAACCT
rJMSF001C09+ CCTGAACCTCCTCCTGGGTTTCCTGTCATCCCAAATCAAGCACAAAACCCTCCCGAACCT
JMFN025J03- CCTGAACCTCCTCCTGGGTTTCCTGTCATCCCAAATCAAGCACAAAACCCTCCCGAACCT
                      ____________________________________________________________
consensus CCTGAACCTCCTCCTGGGTTTCCTGTCATCCCAAATCAAGCACAAAACCCTCCCGAACCT
 
. : . : . : . : . : . :
JMFN011B22- CCTCCTGGGTTTCCCGTCGTCATAACAGACATTCAAAACAGANAAGAGGCTTGCCAGACA
rJMSF046H19+ CCTCCTGGGTTTCCCGTCGTCATAACAGACATTCAAAACAGAAAAGAGGCTTGCCAGACA
rJMSF001C09+ CCTCCTGGGTTTCCCGTCGTCATAACAGACATTCAAAACAGAAAAGAGGCTTGCCAGACA
JMFN025J03- CCTCCTGGGTTTCCCGTCGTCATAACAGACATTCAAAACAGAAAAGAGGCTTGCCAGACA
                      ____________________________________________________________
consensus CCTCCTGGGTTTCCCGTCGTCATAACAGACATTCAAAACAGAAAAGAGGCTTGCCAGACA
 
. : . : . : . : . : . :
JMFN011B22- CAAATTTTCAGCTCGTGAGTGTAACCTC
rJMSF046H19+ CAAATTTTCAGCTCGTGAGTGTAACCTCCTAGCCCTAGGTGAGGAAGGAAGGGAATGATG
rJMSF001C09+ CAAATTTTCAGCTCGTGAGTGTAACCTCCTAGCCCTAGGTGAGGAAGGAAGGGAATGATG
JMFN025J03- CAAATTTTCAGCTCGTGAGTGTAACCTCCTAGCCCTAGGTGAGGAAGGAAGGGAATGATG
                      ____________________________________________________________
consensus CAAATTTTCAGCTCGTGAGTGTAACCTCCTAGCCCTAGGTGAGGAAGGAAGGGAATGATG
 
. : . : . : . : . : . :
rJMSF046H19+ AAGAAGAAATAGAAGATTTGAGTTGGAAGGTCCCATTGTCACCACTGTTCTAACAGCATT
rJMSF001C09+ AAGAAGAAATAGAAGATTTGAGTTGGAAGGTCCCATTGTCACCACTGTTCTAACAGCATT
JMFN025J03- AAGAAGAAATAGAAGATTTGAGTTGGAAGGTCCCATTGTCACCACTGTTCTAACAGCATT
                      ____________________________________________________________
consensus AAGAAGAAATAGAAGATTTGAGTTGGAAGGTCCCATTGTCACCACTGTTCTAACAGCATT
 
. : . : . : . : . : . :
rJMSF046H19+ GAGATTCAATTTGTACAGATTTACACAGCCAATGAAGAAATGTTGAGACATTTATTTAGA
rJMSF001C09+ GAGATTCAATTTGTACAGATTTACACAGCCAATGAAGAAATGTTGAGACATTTATTTAGA
JMFN025J03- GAGATTCAATTTGTACAGATTTACACAGCCAATGAAGAAATGTTGAGACATTTATTTAGA
                      ____________________________________________________________
consensus GAGATTCAATTTGTACAGATTTACACAGCCAATGAAGAAATGTTGAGACATTTATTTAGA
 
. : . : . : . : . : . :
rJMSF046H19+ TAGCTGGGAGGATCAGAATTGATCCGTAACATATAGGACCAATTGTTGTAGGCGGCTCTT
rJMSF001C09+ TAGCTGGGAGGATCAGAATTGATCCGTAACATATAGGACCAATTGTTGTAGGCGGCTCTT
JMFN025J03- TAGCTGGGAGGATCAGAATTGATCCGTAACATATAGGACCAATTGTTGTAGGCGGCTCTT
                      ____________________________________________________________
consensus TAGCTGGGAGGATCAGAATTGATCCGTAACATATAGGACCAATTGTTGTAGGCGGCTCTT
 
. : . : . : . : . : . :
rJMSF046H19+ AATCTGTTTCCAGTCATCTCATCTGTAATAGTAATTTAGATTTATGGACGGACAGA-CAA
rJMSF001C09+ AATCTGTTTCCAGTCATCTCATCTGTAATAGTAATTTAGATTTATGGACGGACAGACCAA
JMFN025J03- AATCTGTTTCCAGTCATCTCATCTGTAATAGTAATTTAGATTTATGGACGGACAGA-CAA
                      ____________________________________________________________
consensus AATCTGTTTCCAGTCATCTCATCTGTAATAGTAATTTAGATTTATGGACGGACAGA-CAA
 
. : . : . : . : . : . :
rJMSF046H19+ GACACCTTTTGTTAGATCTCAATT
rJMSF001C09+ GACACCTTTTGTTAGATCTCAATT
JMFN025J03- GACACCTTTTGTTAGATCTCAATTTATCATAGAGAATGAACCCCCATAGCTTCAGGCTTN
                      ____________________________________________________________
consensus GACACCTTTTGTTAGATCTCAATTTATCATAGAGAATGAACCCCCATAGCTTCAGGCTTN