Contig 003327:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006D24Sequence641003327 (6)ref|XP_009764546.1|3e-74PREDICTED: protein DOWNSTREAM OF FLC-like [Nicotiana sylvestris]
JMFN010C16Sequence626003327 (6)ref|XP_009764546.1|4e-74PREDICTED: protein DOWNSTREAM OF FLC-like [Nicotiana sylvestris]
JMFN015D07Sequence608003327 (6)ref|XP_009764546.1|3e-74PREDICTED: protein DOWNSTREAM OF FLC-like [Nicotiana sylvestris]
JMFN018N23Sequence562003327 (6)ref|XP_009622218.1|4e-59PREDICTED: pollen-specific protein C13-like [Nicotiana tomentosiformis]
JMFN037D19Sequence496003327 (6)ref|XP_009764546.1|6e-49PREDICTED: protein DOWNSTREAM OF FLC-like [Nicotiana sylvestris]
JMFN044N06Sequence421003327 (6)ref|XP_009794836.1|5e-27PREDICTED: pollen-specific protein C13-like, partial [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN044N06+ AAAATAAAGTTTAAACTAACATCA
                      ____________________________________________________________
consensus AAAATAAAGTTTAAACTAACATCA
 
. : . : . : . : . : . :
JMFN044N06+ ATTTAACGAACTATTAAATTGAGTTTCACAAATAGGGAAATGATACCAACATCCACAACT
JMFN018N23+ AACGAACTATTAAATTGAGTTTCACAAATAGGGAAATGATACCAACATCCACAACT
JMFN006D24+ GGGAAATGATACCAACATCCNCAACT
                      ____________________________________________________________
consensus ATTTAACGAACTATTAAATTGAGTTTCACAAATAGGGAAATGATACCAACATCCACAACT
 
. : . : . : . : . : . :
JMFN044N06+ AATAACATAGATATAAGGATGCTTTTAAGCCTCACTCAAACAAAATAAAACAAAGCAAGC
JMFN018N23+ AATAACATAGATATAAGGATGCTTTTAAGCCTCACTCAAACAAAATAAAACAAAGCAAGC
JMFN006D24+ AATAACATAGATATAAGGATGCTTTTAAGCCTCACTCAAACAAAATAAAACAAAGCAAGC
JMFN010C16+ AGCCTCACTCAAACAAAATAAAACAAAGCAAGC
JMFN015D07+ AAAGCAAGC
                      ____________________________________________________________
consensus AATAACATAGATATAAGGATGCTTTTAAGCCTCACTCAAACAAAATAAAACAAAGCAAGC
 
. : . : . : . : . : . :
JMFN044N06+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
JMFN018N23+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
JMFN006D24+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
JMFN010C16+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
JMFN015D07+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
                      ____________________________________________________________
consensus TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
 
. : . : . : . : . : . :
JMFN044N06+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
JMFN018N23+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
JMFN006D24+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
JMFN010C16+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
JMFN037D19+ CCGTGGT
JMFN015D07+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
                      ____________________________________________________________
consensus GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
 
. : . : . : . : . : . :
JMFN044N06+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN018N23+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN006D24+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN010C16+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN037D19+ GGTGAAGCCCATGTTGTTGGCGTAGGGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN015D07+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
                      ____________________________________________________________
consensus GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
 
. : . : . : . : . : . :
JMFN044N06+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN018N23+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN006D24+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN010C16+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN037D19+ GATGACACGGGCCCTGTCACGGGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN015D07+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
                      ____________________________________________________________
consensus GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
 
. : . : . : . : . : . :
JMFN044N06+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCG
JMFN018N23+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
JMFN006D24+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
JMFN010C16+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
JMFN037D19+ TCATCAGAACCACATCGCAGAGGTTATCTCCGCGGTCGCCGTTCACCAGAATGTTGTATT
JMFN015D07+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
                      ____________________________________________________________
consensus TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
 
. : . : . : . : . : . :
JMFN018N23+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
JMFN006D24+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
JMFN010C16+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
JMFN037D19+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
JMFN015D07+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
                      ____________________________________________________________
consensus CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
 
. : . : . : . : . : . :
JMFN018N23+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
JMFN006D24+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
JMFN010C16+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
JMFN037D19+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
JMFN015D07+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
                      ____________________________________________________________
consensus TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
 
. : . : . : . : . : . :
JMFN018N23+ AGTTGCAGGTATCACAGTAGGCTTTGC
JMFN006D24+ AGTTGCAGGTATCACAGTAGGCTTTGCCCTTCACGAGAAAAGGGTTGCCGGAGGAGTGAG
JMFN010C16+ AGTTGCAGGTATCACAGTAGGCTTTGCCCTTCACGAGAAAAGGGTTGCCGGAGGAGTGAG
JMFN037D19+ AGTTGCAGGTATCACAGTAGGCTTTGCCCTTCACGAGAAAAGGGTTGCCGGAGGAGTGAG
JMFN015D07+ AGTTGCAGGTATCACAGTAGGCTTTGCCCTTAACGAGAAAAGGGTTGCCGGAGGAGTGAG
                      ____________________________________________________________
consensus AGTTGCAGGTATCACAGTAGGCTTTGCCCTTCACGAGAAAAGGGTTGCCGGAGGAGTGAG
 
. : . : . : . : . : . :
JMFN006D24+ CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
JMFN010C16+ CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
JMFN037D19+ CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
JMFN015D07+ CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
                      ____________________________________________________________
consensus CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
 
. : . : . : . : . : . :
JMFN006D24+ TCAAGCTGGGTTTTTG
JMFN010C16+ TCAAGCTGGGTTTTTGCTCCTCCTTTCTGGTTCAGTTCTGCCGGAGAGGAAAAG
JMFN037D19+ TCAAGCTGGGTTTTTGCTCCTCCTTTCTGGTTCAGTTCTGCCGGAGAGGAAAAG
JMFN015D07+ TCAAGCTGGGTTTTTGCTCCTCCTTTCTGGTTCAGTTCTGCCGGAGAGGAAAAGCAGTGA
                      ____________________________________________________________
consensus TCAAGCTGGGTTTTTGCTCCTCCTTTCTGGTTCAGTTCTGCCGGAGAGGAAAAGCAGTGA