Contig 003320:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006L03Sequence628003320 (4)ref|XP_004234108.1|3e-27PREDICTED: uncharacterized protein LOC101255560 isoform X4 [Solanum lycopersicu
JMFN010P02Sequence526003320 (4)ref|XP_009607985.1|2e-28PREDICTED: uncharacterized protein LOC104102077 isoform X3 [Nicotiana tomentosi
JMSF007H10Sequence469003320 (4)ref|XP_006361023.1|3e-32PREDICTED: uncharacterized protein LOC102579909 isoform X2 [Solanum tuberosum]557003320 (4)ref|XP_006361023.1|7e-32PREDICTED: uncharacterized protein LOC102579909 isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


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JMFN006L03+                                                                  ATGAG
                      ____________________________________________________________
consensus                                                                    ATGAG
 
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JMFN006L03+           AGAGTAACTCGACACCAGATTAGTTGAAAATTATACAACAATAAAATATCAGGAATCATG
                      ____________________________________________________________
consensus             AGAGTAACTCGACACCAGATTAGTTGAAAATTATACAACAATAAAATATCAGGAATCATG
 
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JMFN006L03+           ATTAACCCAATTTGACTAACATTGGCTAATGTTGCTATCTATCTGTCTAGACTAGATGCA
                      ____________________________________________________________
consensus             ATTAACCCAATTTGACTAACATTGGCTAATGTTGCTATCTATCTGTCTAGACTAGATGCA
 
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JMFN006L03+           CAATGAAACTAAACTTACAGATATATTATTTTTGTCAAAGAAACATGTGCATCATTTTCA
                      ____________________________________________________________
consensus             CAATGAAACTAAACTTACAGATATATTATTTTTGTCAAAGAAACATGTGCATCATTTTCA
 
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JMFN006L03+           AATGAAAGAACAAAAAACCTTATAACTTTGAAATGGGAACCAAACAGAACCTATAATGCC
                      ____________________________________________________________
consensus             AATGAAAGAACAAAAAACCTTATAACTTTGAAATGGGAACCAAACAGAACCTATAATGCC
 
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JMFN006L03+           ACAGGCTGTGTAGTAATACATTGTCCATTGACATCCATGGTACTATGAAGAAGACGTGAA
                      ____________________________________________________________
consensus             ACAGGCTGTGTAGTAATACATTGTCCATTGACATCCATGGTACTATGAAGAAGACGTGAA
 
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JMFN006L03+           TGGTTTCCGATTTTCCCAACACATCTAACAATCATCCATCTTCAAGACTCCAACCACGGC
JMSF007H10+                                               AATCTTCAAGACTCCAACCACGGC
rJMSF007H10-                                               ATCTTCAAGACTCCAACCACGGC
JMFN010P02+                                                ATCTTCAAGACTCCAACCACGGC
                      ____________________________________________________________
consensus             TGGTTTCCGATTTTCCCAACACATCTAACAATCATCCATCTTCAAGACTCCAACCACGGC
 
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JMFN006L03+           TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
JMSF007H10+           TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
rJMSF007H10-          TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
JMFN010P02+           TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
                      ____________________________________________________________
consensus             TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
 
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JMFN006L03+           GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
JMSF007H10+           GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
rJMSF007H10-          GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
JMFN010P02+           GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
                      ____________________________________________________________
consensus             GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
 
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JMFN006L03+           TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
JMSF007H10+           TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
rJMSF007H10-          TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
JMFN010P02+           TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
                      ____________________________________________________________
consensus             TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
 
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JMFN006L03+           TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
JMSF007H10+           TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
rJMSF007H10-          TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
JMFN010P02+           TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
                      ____________________________________________________________
consensus             TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
 
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JMFN006L03+           CGGCGATGGTGGCCATGGTTTCT                                     
JMSF007H10+           CGGCGATGGTGGCCATGGTTTCTTCAGGTACAGATCGCGCTGCG                
rJMSF007H10-          CGGCGATGGTGGCCATGGTTTCTTCAGGTACAGATCGCGCTGCG                
JMFN010P02+           CGGCGATGGTGGCCATGGTTTCTTCAGGTACAGATCGCGCTGCGAGTGGCTTGGATTTGA
                      ____________________________________________________________
consensus             CGGCGATGGTGGCCATGGTTTCTTCAGGTACAGATCGCGCTGCGAGTGGCTTGGATTTGA