Contig 003319:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN005D09Sequence632003319 (7)ref|XP_009799027.1|4e-88PREDICTED: V-type proton ATPase subunit c''1 [Nicotiana sylvestris]
JMFN005J19Sequence627003319 (7)ref|XP_009799027.1|3e-88PREDICTED: V-type proton ATPase subunit c''1 [Nicotiana sylvestris]
JMFN007P19Sequence549003319 (7)ref|XP_009799027.1|1e-88PREDICTED: V-type proton ATPase subunit c''1 [Nicotiana sylvestris]
JMFN010O01Sequence627003319 (7)ref|XP_009799027.1|4e-88PREDICTED: V-type proton ATPase subunit c''1 [Nicotiana sylvestris]
JMFN028B19Sequence586003319 (7)gb|KDP33638.1|4e-84hypothetical protein JCGZ_07209 [Jatropha curcas]
JMFN029E14Sequence485003319 (7)ref|XP_008394041.1|2e-59PREDICTED: V-type proton ATPase subunit c''-like [Malus domestica]
JMSF045L11Sequence695003319 (7)ref|XP_009616142.1|2e-92PREDICTED: V-type proton ATPase subunit c''1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF045L11- ATAAAGCTTTTTCA
                      ____________________________________________________________
consensus ATAAAGCTTTTTCA
 
. : . : . : . : . : . :
rJMSF045L11- GTTAGCCAAAAATAGCACAATAGCTTATTATTGTAAACTTCAAATAACACAGATTATTGA
                      ____________________________________________________________
consensus GTTAGCCAAAAATAGCACAATAGCTTATTATTGTAAACTTCAAATAACACAGATTATTGA
 
. : . : . : . : . : . :
rJMSF045L11- TTCCGAAATACGTGCGCAGATGCAAATAATATAGAACACACAAGAAGAGAGATGGGAGTA
JMFN005J19+ CAGATGCAAATAATATAGAACACCCAAGAAGAGAGATGGGAGTA
JMFN005D09+ GAAGAGAGATGGGAGTA
                      ____________________________________________________________
consensus TTCCGAAATACGTGCGCAGATGCAAATAATATAGAACACCCAAGAAGAGAGATGGGAGTA
 
. : . : . : . : . : . :
rJMSF045L11- AAAGACTGTTATTACACTGCACAAAATACCCTACATAACTCACTAAGCCTTGGATGGCCA
JMFN007P19+ ATAACTCAATAAGCCTTGGATGGCCA
JMFN005J19+ AAAGACTGTTATTACACTGCACAAAATACCCTACATAACTCACTAAGCCTTGGATGGCCA
JMFN005D09+ AAAGACTGTTATTACACTGCACAAAATACCCTACATAACTCACTAAGCCTTGGATGGCCA
JMFN010O01+ CATAACTCACTAAGCCTTGGATGGCCA
                      ____________________________________________________________
consensus AAAGACTGTTATTACACTGCACAAAATACCCTACATAACTCACTAAGCCTTGGATGGCCA
 
. : . : . : . : . : . :
rJMSF045L11- AGATGCTTGAGCTGACATGATTATTCCCACAATGACACCAAACAGCCCCAGTGCGCTACC
JMFN007P19+ AGATGCTTGAGCTGACATGATTATTCCCACAATGACACCAAACAGCCCCAGTGCGCTACC
JMFN029E14+ GACAGGATTATTCCCACAATGACGCCAGACAGCCCCAGGGCGGTACC
JMFN005J19+ AGATGCTTGAGCTGACATGATTATTCCCACAATGACACCAAACAGCCCCAGTGCGCTACC
JMFN005D09+ AGATGCTTGAGCTGACATGATTATTCCCACAATGACACCAAACAGCCCCAGTGCGCTACC
JMFN028B19+ ATGCTTGAGCTGACATGATTATTCCCACAATGACACCAAACAGCCCCAGTGCGCTACC
JMFN010O01+ AGATGCTTGAGCTGACATGATTATTCCCACAATGACACCAAACAGCCCCAGTGCGCTACC
                      ____________________________________________________________
consensus AGATGCTTGAGCTGACATGATTATTCCCACAATGACACCAAACAGCCCCAGTGCGCTACC
 
. : . : . : . : . : . :
rJMSF045L11- AAAAATCTCAATCACCAGAATTTTGACAAAAAGTGTGGAGTTTTGTGCATCAGATAAAGC
JMFN007P19+ AAAAATCTCAATCACCAGAATTTTGACAAAAAGTGTGGAGTTTTGTGCATCAGATAAAGC
JMFN029E14+ AAAAGTGTCAATCACCAGAATTTTGACAAAAAGTGTGGAGTTTTGTGCATCAGATAAAGC
JMFN005J19+ AAAAATCTCAATCACCAGAATTTTGACAAAAAGTGTGGAGTTTTGTGCATCAGATAAAGC
JMFN005D09+ AAAAATCTCAATCACCAGAATTTTGACAAAAAGTGTGGAGTTTTGTGCATCAGATAAAGC
JMFN028B19+ AAAAATCTCAATTACCAGAATTTTGACAAAAAGTGTGGAGTTTTGTGCATCAGATAAAGC
JMFN010O01+ AAAAATCTCAATCACCAGAATTTTGACAAAAAGTGTGGAGTTTTGTGCATCAGATAAAGC
                      ____________________________________________________________
consensus AAAAATCTCAATCACCAGAATTTTGACAAAAAGTGTGGAGTTTTGTGCATCAGATAAAGC
 
. : . : . : . : . : . :
rJMSF045L11- ACAGCTGCTACCGATCACTCCAACGCNCAGCCCGCATACNAGATTGGCAAAGCCAACAAT
JMFN007P19+ ACAGCTGCTACCGATCACTCCAACGCACAGCCCGCATACAAGATTGGCAAAGCCAACAAT
JMFN029E14+ ACAGCTGCTACCGATCACTCCAGCGCACAGCCCGCATACAAGATTGGCAAAGCCAGCAAT
JMFN005J19+ ACAGCTGCTACCGATCACTCCAACGCACAGCCCGCATACAAGATTGGCAAAGCCAACAAT
JMFN005D09+ ACAGCTGCTACCGATCACTCCAACGCACAGCCCGCATACAAGATTGGCAAAGCCAACAAT
JMFN028B19+ ACAGCTGCTACCGATCACTCCAACGCACAGCCCGCATACAAGATTGGCAAAGCCAACAAT
JMFN010O01+ ACAGCTGCTACCGATCACTCCAACGCACAGCCCGCATACAAGATTGGCAAAGCCAACAAT
                      ____________________________________________________________
consensus ACAGCTGCTACCGATCACTCCAACGCACAGCCCGCATACAAGATTGGCAAAGCCAACAAT
 
. : . : . : . : . : . :
rJMSF045L11- TATCCCTGAGGCAAAAATTGCATAGCCAGCTGTGAGGGACTCGTGTGCATGCATCTGGGA
JMFN007P19+ TATCCCTGAGGCAAAAATTGCATAGCCAGCTGTGAGGGACTCGTGTGCATGCATCTGGGA
JMFN029E14+ TATCCCTGAGGCAAAAATTGCATAGCCAGCTGTGAGGGACTCGTGTGCATGCATCTGGGA
JMFN005J19+ TATCCCTGAGGCAAAAATTGCATAGCCAGCTGTGAGGGACTCGTGTGCATGCATCTGGGA
JMFN005D09+ TATCCCTGAGGCAAAAATTGCATAGCCAGCTGTGAGGGACTCGTGTGCATGCATCTGGGA
JMFN028B19+ TATCCCTGAGGCAAAAATTGCATAGCCAGCTGTGAGGGACTCGTGTGCATGCATCTGGGA
JMFN010O01+ TATCCCTGAGGCAAAAATTGCATAGCCAGCTGTGAGGGACTCGTGTGCATGCATCTGGGA
                      ____________________________________________________________
consensus TATCCCTGAGGCAAAAATTGCATAGCCAGCTGTGAGGGACTCGTGTGCATGCATCTGGGA
 
. : . : . : . : . : . :
rJMSF045L11- GGAAGGAACAGTCTCAAGCTTCGTTTGGAGAATGATAGCCACANTGACACCATATATCGC
JMFN007P19+ GGAAGGAACAGTCTCAAGCTTCGTTTGGAGAATGATAGCCACAATGACACCATATATCGC
JMFN029E14+ GGAAGGAACAGTCTCAAGCTTCGTTTGGAGAATGATAGCCGCAATGGCACCATATATCGC
JMFN005J19+ GGAAGGAACAGTCTCAAGCTTCGTTTGGAGAATGATAGCCACAATGACACCATATATCGC
JMFN005D09+ GGAAGGAACAGTCTCAAGCTTCGTTTGGAGAATGATAGCCACAATGACACCATATATCGC
JMFN028B19+ GGAAGGAACAGTCTCAAGCTTCGTTTGGAGAATGATAGCCACAATGACACCATATATCGC
JMFN010O01+ GGAAGGAACAGTCTCAAGCTTCGTTTGGAGAATGATAGCCACAATGACACCATATATCGC
                      ____________________________________________________________
consensus GGAAGGAACAGTCTCAAGCTTCGTTTGGAGAATGATAGCCACAATGACACCATATATCGC
 
. : . : . : . : . : . :
rJMSF045L11- AACTGCCTCGCAAAAAATTACACTGATGAGATTTTTGGAGGTAATGCGAGGGGCTTTGAT
JMFN007P19+ AACTGCCTCGCAAAAAATTACACTGATGAGATTTTTGGAGGTAATGCGAGGGGCTTTGAT
JMFN029E14+ AGCTGCCTCGCAAAAAATTACACTGATGAGATTTTTGGAGGTAATGCGAGGGGCTTTGAT
JMFN005J19+ AACTGCCTCGCAAAAAATTACACTGATGAGATTTTTGGAGGTAATGCGAGGGGCTTTGAT
JMFN005D09+ AACTGCCTCGCAAAAAATTACACTGATGAGATTTTTGGAGGTAATGCGAGGGGCTTTGAT
JMFN028B19+ AACTGCCTCGCAAAAAATTACACTGATGAGATTTTTGGAGGTAATGCGAGGGGCTTTGAT
JMFN010O01+ AACTGCCTCGCAAAAAATTACACTGATGAGATTTTTGGAGGTAATGCGAGGGGCTTTGAT
                      ____________________________________________________________
consensus AACTGCCTCGCAAAAAATTACACTGATGAGATTTTTGGAGGTAATGCGAGGGGCTTTGAT
 
. : . : . : . : . : . :
rJMSF045L11- CGCAGCGCCAATCAAACTACTTCCTGTTATATAGATCCCCCAGGCAGCACCGAGAACTGA
JMFN007P19+ CGCAGCGCCAATCAAACTACTTCCTGTTATATAGATCCCCCAGGCAGCACCGAGAACTGA
JMFN029E14+ CGCAGCGCCAATCAAAGTACTTCCTGTTATATAGATCCCCCAGGCAGCACCGAGAGCGGA
JMFN005J19+ CGCAGCGCCAATCAAACTACTTCCTGTTATATAGATCCCCCAGGCAGCACCGAGAACTGA
JMFN005D09+ CGCAGCGCCAATCAAACTACTTCCTGTTATATAGATCCCCCAGGCAGCACCGAGAACTGA
JMFN028B19+ CGCAGCGCCAATCAAACTACTTCCTGTTATATAGATCCCCCAGGCAGCACCGAGAACTGA
JMFN010O01+ CGCAGCGCCAATCAAACTACTTCCTGTTATATAGATCCCCCAGGCAGCACCGAGAACTGA
                      ____________________________________________________________
consensus CGCAGCGCCAATCAAACTACTTCCTGTTATATAGATCCCCCAGGCAGCACCGAGAACTGA
 
. : . : . : . : . : . :
rJMSF045L11- AACGCCNATNGAGATGGCNATTCCGATGGCGGAGAAGGTGTAGGGAGAGATCTGCGTCAG
JMFN007P19+ AACGCCGATTGAGATGGCAATTCCGATGGCGGAGAAGGTGTAGGGAGAGATCTGCGTCAG
JMFN029E14+ AACGCCGATTGAGATGGCAATTCCGATGGCGGAGAAGGTGTAGGGAGAGATTTGCGTCAG
JMFN005J19+ AACGCCGATTGAGATGGCAATTCCGATGGCGGAGAAGGTGTAGGGAGAGATCTGCGTCAG
JMFN005D09+ AACGCCGATTGAGATGGCAATTCCGATGGCGGAGAAGGTGTAGGGAGAGATCTGCGTCAG
JMFN028B19+ AACGCCGATTGAGATGGCAATTCCGATGGCGGAGAAGGTGTAGGGAGAGATCTGCGTCAG
JMFN010O01+ AACGCCGATTGAGATGGCAATTCCGATGGCGGAGAAGGTGTAGGGAGAGATCTGCGTCAG
                      ____________________________________________________________
consensus AACGCCGATTGAGATGGCAATTCCGATGGCGGAGAAGGTGTAGGGAGAGATCTGCGTCAG
 
. : . : . : . : . : . :
rJMSF045L11- CGCTCGCGACCATGAGCTTGA
JMFN007P19+ CGCTCGCGACCATGAGCTTGAATCGCCACCCATCGT
JMFN029E14+ CGCTCGCGACCATGAGCT
JMFN005J19+ CGCTCGCGACCATGAGCTTGAATCGCCACCCATCGTGAGATCG
JMFN005D09+ CGCTCGCGACCATGAGCTTGAATCGCCACCCATCGTGAGATCGGAAGTTCGCCAAGTATG
JMFN028B19+ CGCTCGCGACCATGAGCTTGAATCGCCACCCATCGTGAGATCGGAAGTTCGCCAAGTATG
JMFN010O01+ CGCTCGCGACCATGAGCTTGAATCGCCACCCATCGTGAGATCGGAAGTTCGCCAAGTATG
                      ____________________________________________________________
consensus CGCTCGCGACCATGAGCTTGAATCGCCACCCATCGTGAGATCGGAAGTTCGCCAAGTATG
 
. : . : . : . : . : . :
JMFN005D09+ GATTCAGATTTCAGA
JMFN028B19+ GATTCAGATTTCAGAGATCGGTAGATAGGGG
JMFN010O01+ GATTCAGATTTCAGAGATCGGTAGATAGGGGAATGGGGAAGGATGAAGATGGAGAGAGAA
                      ____________________________________________________________
consensus GATTCAGATTTCAGAGATCGGTAGATAGGGGAATGGGGAAGGATGAAGATGGAGAGAGAA