Contig 003307:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN005A04Sequence424003307 (5)ref|XP_008337927.1|144PREDICTED: uncharacterized protein LOC103400976 [Malus domestica] ref|XP_0083379
JMFN038K19Sequence575003307 (5)ref|XP_008337927.1|144PREDICTED: uncharacterized protein LOC103400976 [Malus domestica] ref|XP_0083379
JMFS112G11Sequence481003307 (5)ref|XP_008337927.1|144PREDICTED: uncharacterized protein LOC103400976 [Malus domestica] ref|XP_0083379
JMSF040G23Sequence501003307 (5)ref|XP_008337927.1|144PREDICTED: uncharacterized protein LOC103400976 [Malus domestica] ref|XP_0083379446003307 (5)ref|XP_008337927.1|144PREDICTED: uncharacterized protein LOC103400976 [Malus domestica] ref|XP_0083379

Alignment

This contig is upended


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JMFN038K19+                                    GCTGNNGAACAGTGGAGTGGGTTCAAGATTCAATA
                      ____________________________________________________________
consensus                                      GCTGNNGAACAGTGGAGTGGGTTCAAGATTCAATA
 
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JMFN038K19+           AAAAGAGTAACAGTGGAGTGGGTTCAAGATTCAACAAAAAGAGTATAAATTTCAAAAAAA
                      ____________________________________________________________
consensus             AAAAGAGTAACAGTGGAGTGGGTTCAAGATTCAACAAAAAGAGTATAAATTTCAAAAAAA
 
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JMFN038K19+           TAAAAAATAAAAAAGAGTATAAAATCACAAATGTTGTAAACACTGGCTTTATTACAAGCT
JMFN005A04+                                                                   AGCT
                      ____________________________________________________________
consensus             TAAAAAATAAAAAAGAGTATAAAATCACAAATGTTGTAAACACTGGCTTTATTACAAGCT
 
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JMFN038K19+           TCCACACAGTACAAGGAAGGCAGGCTAGTAGCCTGCATATTGAATCCAACACAGTTTTCT
rJMSF040G23-                           AGGCAGGCTAGTAGCCTGCATATTGAATCCAACACAGTTTTCT
JMFN005A04+           TCCACACAGTACAAGAAAGGCAGGCTAGTAGCCTGCATATTGAATCCAACACAGTTTTCT
                      ____________________________________________________________
consensus             TCCACACAGTACAAGGAAGGCAGGCTAGTAGCCTGCATATTGAATCCAACACAGTTTTCT
 
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JMFN038K19+           TGATGCAGCATAAATCATCAAAGATATGCAGAACCTAAAAAATGGAAATACAATAGGCTA
rJMSF040G23-          TGATGCAGCATAAATCATCAAAGATATGCAGAACCTAAAAAATGGAAATACAATAGGCTA
JMFN005A04+           TGATGCAGCATAAATCATCAAAGATATGCAGAACCTAAAAAATGGAAATACAATAGGCTA
                      ____________________________________________________________
consensus             TGATGCAGCATAAATCATCAAAGATATGCAGAACCTAAAAAATGGAAATACAATAGGCTA
 
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JMFN038K19+           TCTTTCTGACAAATTAGTATTCTTTTGTCCCAAAATTCTTGCACCAGAGCTGAGAGGGAA
rJMSF040G23-          TCTTTCTGACAAATTAGTATTCTTTTGTCCCAAAATTCTTGCACCAGAGCTGAGAGGGAA
JMFS112G11+                     AAATTAGTATTCTTTTGTCCCAAAATTCTTGCACCAGAGCTGAGAGGGAA
JMSF040G23+                     AAATTAGTATTCTTTTGTCCCAAAATTCTTGCACCAGAGCTGAGAGGGAA
JMFN005A04+           TCTTTCTGACAAATTAGTATTCTTTTGTCCCAAAATTCTTGCACCAGAGCTGAGAGGGAA
                      ____________________________________________________________
consensus             TCTTTCTGACAAATTAGTATTCTTTTGTCCCAAAATTCTTGCACCAGAGCTGAGAGGGAA
 
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JMFN038K19+           TAGGCCTGACTGGATTATGTGGCCTTTGCTCGAGCTCGGCGGATTTCATGGCGATTGGAA
rJMSF040G23-          TAGGCCTGACTGGATTATGTGGCCTTTGCTCGAGCTCGGCGGATTTCATGGCGATTGGAA
JMFS112G11+           TAGGCCTGACTGGATTATGTGGCCTTTGCTCGAGCTCGGCGGATTTCATGGCGATTGGAA
JMSF040G23+           TAGGCCTGACTGGATTATGTGGCCTTTGCTCGAGCTCGGCGGATTTCATGGCGATTGGAA
JMFN005A04+           TAGGCCTGACTGGATTATGTGGCCTTTGCTCGAGCTCGGCGGATTTCATGGCGATTGGAA
                      ____________________________________________________________
consensus             TAGGCCTGACTGGATTATGTGGCCTTTGCTCGAGCTCGGCGGATTTCATGGCGATTGGAA
 
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JMFN038K19+           TGCAAATTAGGACGATGCCGGCCATGGCGATGGCAGTGTTGCGTTTCCAGTACCTGGGCC
rJMSF040G23-          TGCAAATTAGGACGATGCCGGCCATGGCGATGGCAGTGTTGCGTTTCCAGTACCTGGGCC
JMFS112G11+           TGCAAATTAGGACGATGCCGGCCATGGCGATGGCAGTGTTGCGTTTCCAGTACCTGGGCC
JMSF040G23+           TGCAAATTAGGACGATGCCGGCCATGGCGATGGCAGTGTTGCGTTTCCAGTACCTGGGCC
JMFN005A04+           TGCAAATTAGGACGATGCCGGCCATGGCGATGGCAGTGTTGCGTTTCCAGTACCTGGGCC
                      ____________________________________________________________
consensus             TGCAAATTAGGACGATGCCGGCCATGGCGATGGCAGTGTTGCGTTTCCAGTACCTGGGCC
 
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JMFN038K19+           TGCAGTTAGGGCCACCGGTCATGGTCCAGACCTTCTCCCGGAAGTCGCCGCCGTGGTCTC
rJMSF040G23-          TGCAGTTAGGGCCACCGGTCATGGTCCAGACCTTCTCCCGGAAGTCGCCG          
JMFS112G11+           TGCAGTTAGGGCCACCGGTCATGGTCCAGACCTTCTCCCGGAAGTCGCCGCCGTGGTCTC
JMSF040G23+           TGCAGTTAGGGCCACCGGTCATGGTCCAGACCTTCTCCCGGAAGTCGCCG          
JMFN005A04+           TGCAGTTAGGGCCACCGGTCATGGTCCAGACCTTCTCCCGGAAGTCGCCGCCGTGGTCTC
                      ____________________________________________________________
consensus             TGCAGTTAGGGCCACCGGTCATGGTCCAGACCTTCTCCCGGAAGTCGCCGCCGTGGTCTC
 
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JMFN038K19+           CTCCTCCGGCCATGGTTTACACTCTTCTTCAGCCGCTGAGAACGATCGGAATCGACTCTA
JMFS112G11+           CTCCTCCGGCCATGGTTTACACTCT                                   
JMFN005A04+           CTCCTCCGGCCATGGTTTACACTCTTCTTCAGCCGCTGAGAACGATCGGAATCGACTCTA
                      ____________________________________________________________
consensus             CTCCTCCGGCCATGGTTTACACTCTTCTTCAGCCGCTGAGAACGATCGGAATCGACTCTA