Contig 003306:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E09-              AATACACATGATTCTGGCTCTTTTTGATCCGTGATAACAACTGATTACTATCAGAA
                      ____________________________________________________________
consensus                 AATACACATGATTCTGGCTCTTTTTGATCCGTGATAACAACTGATTACTATCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E09-          TAAATATTGAAGTTAGTAGGAAACAAAACAAGATACAAATCTGGTGATATTATGAGCAGG
JMFN004O04+                                                AATCTGGTGATATTATGAGCAGG
                      ____________________________________________________________
consensus             TAAATATTGAAGTTAGTAGGAAACAAAACAAGATACAAATCTGGTGATATTATGAGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E09-          CGATGATGTCCTCAAAATCTAGTCTAGATATAAGCATAACCTTACAACCACAATATTCCA
JMFN004O04+           CGATGATGTCCTCAAAATCTAGTCTAGATATAAGCATAACCTTACAACCACAATATTCCA
                      ____________________________________________________________
consensus             CGATGATGTCCTCAAAATCTAGTCTAGATATAAGCATAACCTTACAACCACAATATTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+                                                                    TCT
rJMFF030E09-          AACAACCTGCAGATGTTTCCATAGGTTAACAGGTTTTGAGCATTCCTTCAAAACCTCTCT
JMFN004O04+           AACAACCTGCAGATGTTTCCATAGGTTAACAGGTTTTGAGCATTCCTTCAAAACCTCTCT
                      ____________________________________________________________
consensus             AACAACCTGCAGATGTTTCCATAGGTTAACAGGTTTTGAGCATTCCTTCAAAACCTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+           GGCGCGCTGTACTTCAAGGGCTCTTCGAAGCTTTGTCCAGAGCATCAAAGACGGTCTGTA
rJMFF030E09-          GGCGCGCTGTACTTCAAGGGCTCTTCGAAGCTTTGTCCAGAGCATCAAAGACGGTCTGTA
JMFN004O04+           GGCGCGCTGTACTTCAAGGGCTCTTCGAAGCTTTGTCCAGAGCATCAAAGACGGTCTGTA
                      ____________________________________________________________
consensus             GGCGCGCTGTACTTCAAGGGCTCTTCGAAGCTTTGTCCAGAGCATCAAAGACGGTCTGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+           CATTTACTTCCTCCACAATCACAACCTTATCTCTAGACTTTGACCCTGAACCTATGGAAA
rJMFF030E09-          CATTTACTTCCTCCACAATCACAACCTTATCTCTAGACTTTGACCCTGAACCTATGGAAA
JMFN004O04+           CATTTACTTCCTCCACAATCACAACCTTATCTCTAGACTTTGACCCTGAACCTATGGAAA
                      ____________________________________________________________
consensus             CATTTACTTCCTCCACAATCACAACCTTATCTCTAGACTTTGACCCTGAACCTATGGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+           CTTGCCTTCGTTTTACACCAATAACCTGTCCAAGGAGCTAATGTAGTCGAGAAGCGCGGC
rJMFF030E09-          CTTGCCTTCGTTTTACACCAATAACCTGTCCAAGGAGCTAATGTAGTCGAGAAGCGCGGC
JMFN004O04+           CTTGCCTTCGTTTTACACCAATAAC--------GGAGCTAATGTAGTCGAGAAGCGCGGC
                      ____________________________________________________________
consensus             CTTGCCTTCGTTTTACACCAATAACCTGTCCAAGGAGCTAATGTAGTCGAGAAGCGCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+           ATTCGCTTCGCCATCTTTTGCAGGCGCATCAATTTGGACTCCAACAGCTTCGTCGCTCAA
rJMFF030E09-          ATTCGCTTCGCCATCTTTTGCAGGCGCATCAATTTGGACTCCAACAGCTTCGTCGCTCAA
JMFN004O04+           ATTCGCTTCGCCATCTTTTGCAGGCGCATCAATTTGGACTCCAACAGCTTCGTCGCTCAA
                      ____________________________________________________________
consensus             ATTCGCTTCGCCATCTTTTGCAGGCGCATCAATTTGGACTCCAACAGCTTCGTCGCTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+           ATCAGTGATGGTGGCGATTTTGGAGCCGGGCTTGGCGTGGATGGTTATTGCGACGGAGGA
rJMFF030E09-          ATCAGTGATGGTGGCGATTTTGGAGCCGGGCTTGGCGTGGATGGTTATTGCGACGGAGGA
JMFN004O04+           ATCAGTGATGGTGGCGATTTTGGAGCCGGGCTTGGCGTGGATGGTTATTGCGACGGAGGA
                      ____________________________________________________________
consensus             ATCAGTGATGGTGGCGATTTTGGAGCCGGGCTTGGCGTGGATGGTTATTGCGACGGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+           CGGAGCGACGACGCGGAGGCAAGCCGGGTATTTGGAGGTCGGAGATTGGGTAGACTGAGT
rJMFF030E09-          CGGAGCGACGACGCGGAGGCAAGCCGGGTATTTGGAGGTCGGAGATTGGGTAGACTGAGT
JMFN004O04+           CGGAGCGACGACGCGGAGGCAAGCCGGGTATTTGGAGGTCGGAGATTGGGTAGACTGAGT
                      ____________________________________________________________
consensus             CGGAGCGACGACGCGGAGGCAAGCCGGGTATTTGGAGGTCGGAGATTGGGTAGACTGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+           TGACTCGGTGGCTGAGTTGCCTTTGTTTTTGCCTTTCTTCGATGGAGCCATCTTTCTGTT
rJMFF030E09-          TGACTCGGTGGCTGAGTTGCCTTTGTTTTTGCCTTTCTTCGATGGAGCCATCTTTCTGTT
JMFN004O04+           TGACTCGGTGGCTGAGTTGCCTTTGTTTTTGCCTTTCTTCGATGGAGCCATCTTTCTGTT
                      ____________________________________________________________
consensus             TGACTCGGTGGCTGAGTTGCCTTTGTTTTTGCCTTTCTTCGATGGAGCCATCTTTCTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030E09+           AATCTTCG                                                    
rJMFF030E09-          AATCTTCGCTGGA                                               
JMFN004O04+           AATCTTCGCTGGATTTGTATTTGTGAGTTTTCAGAGCCGAAACTACCGGCGTCGAGTTTC
                      ____________________________________________________________
consensus             AATCTTCGCTGGATTTGTATTTGTGAGTTTTCAGAGCCGAAACTACCGGCGTCGAGTTTC