Contig 003300:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023P04Sequence414003300 (8)ref|XP_004236045.1|6e-43PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum] ref|XP_00634516422003300 (8)ref|XP_004236045.1|6e-43PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum] ref|XP_00634516
JMFF051E10Sequence488003300 (8)ref|XP_004236045.1|1e-42PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum] ref|XP_00634516473003300 (8)ref|XP_004236045.1|2e-41PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum] ref|XP_00634516
JMFN017M05Sequence471003300 (8)ref|XP_004236045.1|7e-40PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum] ref|XP_00634516
JMFN018A01Sequence437003300 (8)ref|XP_004236045.1|6e-17PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum] ref|XP_00634516
JMSF034B05Sequence497003300 (8)ref|XP_004236045.1|8e-40PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum] ref|XP_00634516436003300 (8)ref|XP_004236045.1|4e-40PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum] ref|XP_00634516

Alignment

This contig is upended


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rJMFF051E10-                      CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTAAGCAGGT
                      ____________________________________________________________
consensus                         CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTAAGCAGGT
 
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JMSF034B05+                TAATTAATATTAAAATGGAAACAGTAATTAAGTTAACAGAGTTCAACTTCTGGCA
rJMFF051E10-          AGAATTAATTAATATTAAAATGGAAACAGAAATTAAGTTAACAGAGTTCAATTTCTAGCA
rJMFF023P04-                                                                CTAGCA
rJMSF034B05-                                                     GAGTTCAACTTCTGGCA
JMFN017M05+                TAATTAATATTAAAATGGAAACAGTAATTAAGTTAACAGAGTTCAACTTCTGGCA
JMFF051E10+                TAATTAATATTAAAATGGAAACAGAAATTAAGTTAACAGAGTTCAATTTCTAGCA
                      ____________________________________________________________
consensus             AGAATTAATTAATATTAAAATGGAAACAGAAATTAAGTTAACAGAGTTCAACTTCTGGCA
 
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JMSF034B05+           TATAAGCAATATCCAAACTCCAGAGAAACCTAGCTCCAGGGCCTAACGTTTGGCAATT--
rJMFF051E10-          TATGATCAATATCCGAACTCAAGAAAACCCTAGCTCTAGGGCACAACGTTTAGCAATTTA
rJMFF023P04-          TATGATCAATATCCGAACTCAAGAAAACCCTAGCTCTAGGGCACAACGTTTAGCAATTTA
rJMSF034B05-          TATAAGCAATATCCAAACTCCAGAGAAACCTAGCTCCAGGGCCTAACGTTTGGCAATT--
JMFN017M05+           TATAAGCAATATCCAAACTCCAGAGAAACCTAGCTCCAGGGCCTAACGTTTGGCAATT--
JMFF051E10+           TATGATCAATATCCGAACTCAAGAAAACCCTAGCTCTAGGGCACAACGTTTAGCAATTTA
                      ____________________________________________________________
consensus             TATGATCAATATCCGAACTCCAGAGAACCCTAGCTCTAGGGCCTAACGTTTGGCAATTTA
 
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JMSF034B05+           ----TAAAATTACAAAAACTAAGGAAAATTGATTCTTCGAATCAGTGTTTTAATTCCATA
rJMFF051E10-          AAACTAAAATTACAAAAACTAAGGAAAATTGAATCTTGGAATCAGTGTTTTAATTCCATA
rJMFF023P04-          AAACTAAAATTACAAAAACTAAGGAAAATTGAATCTTGGAATCAGTGTTTTAATTCCATA
rJMSF034B05-          ----TAAAATTACAAAAACTAAGGAAAATTGATTCTTCGAATCAGTGTTTTAATTCCATA
JMFN017M05+           ----TAAAATTACAAAAACTAAGGAAAATTGATTCTTCGAATCAGTGTTTTAATTCCATA
JMFF023P04+               TAAAATTACAAAAACTAAGGAAAATTGAATCTTGGAATCAGTGTTTTAATTCCATA
JMFF051E10+           AAACTAAAATTACAAAAACTAAGGAAAATTGAATCTTGGAATCAGTGTTTTAATTCCATA
                      ____________________________________________________________
consensus             AAACTAAAATTACAAAAACTAAGGAAAATTGAATCTTGGAATCAGTGTTTTAATTCCATA
 
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JMSF034B05+           ACGCTCTTGATCTCGGGGGCATAGAGGCCATAGACGACGGCCTGACGTTTGGCAATCTCG
JMFN018A01+                            GGCATAGAGGCCATAGTTTACGGCCTAACGTTTGGCAATCTTG
rJMFF051E10-          ACGCTCTTGATCTTGGAGGCATAGAGGCCATAGACGACGGCCTGACGTTTGGCAATCTCG
rJMFF023P04-          ACGCTCTTGATCTTGGAGGCATAGAGGCCATAGACGACGGCCTGACGTTTGGCAATCTCG
rJMSF034B05-          ACGCTCTTGATCTCGGGGGCATAGAGGCCATAGACGACGGCCTGACGTTTGGCAATCTCG
JMFN017M05+           ACGCTCTTGATCTCGGGGGCATAGAGGCCATAGACGACGGCCTGACGTTTGGCAATCTCG
JMFF023P04+           ACGCTCTTGATCTTGGAGGCATAGAGGCCATAGACGACGGCCTGACGTTTGGCAATCTCG
JMFF051E10+           ACGCTCTTGATCTTGGAGGCATAGAGGCCATAGACGACGGCCTGACGTTTGGCAATCTCG
                      ____________________________________________________________
consensus             ACGCTCTTGATCTTGGAGGCATAGAGGCCATAGACGACGGCCTGACGTTTGGCAATCTCG
 
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JMSF034B05+           AGCTGTGCCTTTCCATCTGAGATGGCGGCGGCAACCAGAGACGAGTCTGAGAGGGCCTTG
JMFN018A01+           AGCTGTGCCTTTCCATGTGAGAAGGCGCCTTCAACCAGAGAGCAGTTTGATAGGGCCTTG
rJMFF051E10-          AGCTGTGCCTTTCCATCTGAGAAGGCGGCTGCAACCAGAGACGAGTTTGAGAGGGCCTTG
rJMFF023P04-          AGCTGTGCCTTTCCATCTGAGAAGGCGGCTGCAACCAGAGACGAGTTTGAGAGGGCCTTG
rJMSF034B05-          AGCTGTGCCTTTCCATCTGAGATGGCGGCGGCAACCAGAGACGAGTCTGAGAGGGCCTTG
JMFN017M05+           AGCTGTGCCTTTCCATCTGAGATGGCGGCGGCAACCAGAGACGAGTCTGAGAGGGCCTTG
JMFF023P04+           AGCTGTGCCTTTCCATCTGAGAAGGCGGCTGCAACCAGAGACGAGTTTGAGAGGGCCTTG
JMFF051E10+           AGCTGTGCCTTTCCATCTGAGAAGGCGGCTGCAACCAGAGACGAGTTTGAGAGGGCCTTG
                      ____________________________________________________________
consensus             AGCTGTGCCTTTCCATCTGAGAAGGCGGCTGCAACCAGAGACGAGTTTGAGAGGGCCTTG
 
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JMSF034B05+           TTCTGCCGGAAGGCGTCAACGGTACGGCGCTTGGTGTACTCTCG                
JMFN018A01+           TTATGGCGGAAGGCGTCTATGGTACGGCGCGTGGTGTACTTTTGTATGTTGCAGTCTG  
rJMFF051E10-          TTCTGGCGGAAGGCGTCAATGGTACGGCGCTTGGTGTACTCTCGTATGTTGTAGTCTGGG
rJMFF023P04-          TTCTGGCGGAAGGCGTCAATGGTACGGCGCTTGGTGTACTCTCGTATGTTGTAGTCTGGG
rJMSF034B05-          TTCTGCCGGAAGGCGTCAACGGTACGGCGCTTGGTGTACTCTCG                
JMFN017M05+           TTCTGCCGGAAGGCGTCAACGGTACGGCGCTTGGTGTACTCTCGTATGTTGTAGTCTGAG
JMFF023P04+           TTCTGGCGGAAGGCGTCAATGGTACGGCGCTTGGTGTACTCTCGTATGTTGTAGTCTGGG
JMFF051E10+           TTCTGGCGGAAGGCGTCAATGGTACGGCGCTTGGTGTACTCTCGTATGTTGTAGTCTGGG
                      ____________________________________________________________
consensus             TTCTGGCGGAAGGCGTCAATGGTACGGCGCTTGGTGTACTCTCGTATGTTGTAGTCTGGG
 
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rJMFF051E10-          AAGTCACGCGCCGTCCTCAGCAGTGACCGGAACAACGAGAGAACTTGGAGGCGTGATGGC
rJMFF023P04-          AAGTCACGCGCCGTCCTCAGCAGTGACCGGAACAACGAGAGAACTTGGAGGCGTGATGGC
JMFN017M05+           AAGTCACGCGCCGTCCTCAGCAGTGACCGGAACAACGAGAGAACATGGAGGCGTGATGTC
JMFF023P04+           AAGTCACGCGCCGTCCTCAGCAGTGACCGGAACAACGAGAGAACTTGGAGGCGTGATGGC
JMFF051E10+           AAGTCACGCGCCGTCCTCAGCAGTGACCGGAACAACGAGAGAACTTGGAGGCGTGATGGC
                      ____________________________________________________________
consensus             AAGTCACGCGCCGTCCTCAGCAGTGACCGGAACAACGAGAGAACTTGGAGGCGTGATGGC
 
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rJMFF051E10-          GACGC                                                       
rJMFF023P04-          GACGCCATTTTTGCTCCTTTCTTCAGATTTTGGAGAGAGAGGCAGCAAC           
JMFN017M05+           GACGCCATTTTTGGTCCTTTCTTCAGATTTTGGAGAGAGCGGTAGCAAC           
JMFF023P04+           GACGCCATTTTTGCTCCTTTCTTCAGA                                 
JMFF051E10+           GACGCCATTTTTGCTCCTTTCTTCAGATTTTGGAGAGAGAGGCAGCAACGGGCATCAAAT
                      ____________________________________________________________
consensus             GACGCCATTTTTGCTCCTTTCTTCAGATTTTGGAGAGAGAGGCAGCAACGGGCATCAAAT