| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004A17 | Sequence | 532 | 003297 (4) | ref|XP_009778673.1| | 146 | PREDICTED: uncharacterized protein LOC104227990 [Nicotiana sylvestris] | 683 | 003297 (4) | ref|XP_009798216.1| | 119 | PREDICTED: uncharacterized protein LOC104244483 [Nicotiana sylvestris] |
| JMFF050O01 | Sequence | 648 | 003297 (4) | ref|XP_009778673.1| | 146 | PREDICTED: uncharacterized protein LOC104227990 [Nicotiana sylvestris] | 581 | 004043 (2) | ref|XP_004236861.1| | 8e-31 | PREDICTED: putative UPF0481 protein At3g02645 isoform X1 [Solanum lycopersicum] |
| JMFN008J20 | Sequence | 620 | 003297 (4) | ref|XP_009778673.1| | 156 | PREDICTED: uncharacterized protein LOC104227990 [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF004A17- ATTTTTTCATCATTTGGAATACAT
____________________________________________________________
consensus ATTTTTTCATCATTTGGAATACAT
. : . : . : . : . : . :
rJMFF004A17- AGGGAGTGCTTCCCAGGCATACAACAAAAACAACTACTCCATCTCATGAATGAGACGCAA
____________________________________________________________
consensus AGGGAGTGCTTCCCAGGCATACAACAAAAACAACTACTCCATCTCATGAATGAGACGCAA
. : . : . : . : . : . :
rJMFF004A17- ACTAACAATCCCTAAACTGATCATTGTGCACCAAATTCACGCAATCAGGAGGGGAGTGCC
____________________________________________________________
consensus ACTAACAATCCCTAAACTGATCATTGTGCACCAAATTCACGCAATCAGGAGGGGAGTGCC
. : . : . : . : . : . :
rJMFF004A17- AAACTCCACCCATCCCTGGCTGCAATTAGCATCCAAAAAGGCAAAAAAGTCGATAAACAT
____________________________________________________________
consensus AAACTCCACCCATCCCTGGCTGCAATTAGCATCCAAAAAGGCAAAAAAGTCGATAAACAT
. : . : . : . : . : . :
rJMFF004A17- GAACACGAACATGAACATGCTTTCTACTTTTTACTTTCCCCTGAATCTCTTGGAAATGAT
____________________________________________________________
consensus GAACACGAACATGAACATGCTTTCTACTTTTTACTTTCCCCTGAATCTCTTGGAAATGAT
. : . : . : . : . : . :
rJMFF004A17- CTATTCTCCCTAGAAGGAGATTACTATTTCGTCGGGAAAACAATGTTGGAGTGTAAAATT
JMFN008J20+ AGAAGGAGATTACTATTTCGTCGGGAAAACAATGTTGGAGTGTAAAATT
JMFF050O01+ AGAAGGAGATTACTATTTCGTCGGGAAAACAATGTGGGAGTGTAAAATT
____________________________________________________________
consensus CTATTCTCCCTAGAAGGAGATTACTATTTCGTCGGGAAAACAATGTTGGAGTGTAAAATT
. : . : . : . : . : . :
rJMFF004A17- CGCCGTAACAAGAGCCTCACGCATCTCCGGCTTTGGACATTTGCGAGAGCCGGCTAGGCG
JMFN008J20+ CGCCGTAACAAGAGCCTCACGCATCTCCGGCTTTGGACATTTGCGAGAGCCGGCTAGGCG
JMFF050O01+ CGCCGTAACAAGAGCCTCACGCATCTCCGGCTTTGGACA-TTGCGAGAGCCGGCTAGGCG
____________________________________________________________
consensus CGCCGTAACAAGAGCCTCACGCATCTCCGGCTTTGGACATTTGCGAGAGCCGGCTAGGCG
. : . : . : . : . : . :
rJMFF004A17- GCCTCATCTGGAAATCGACTCGACGCCGGAGAGTGTGCGAGGACGGTCGAATGTGAACCG
JMFN008J20+ GCCTCATCTGGAAATCGACTCGACGCCGGAGAGTGTGCGAGGACGGTCGAATGTGAACCG
JMFF004A17+ TCTGGAAATCGACTCGACGCCGGAGAGTGTGCGAGGACGGTCGAATGTGAACCG
JMFF050O01+ GCCTCATCTGGAAATCGACTCGACGCCGGAGAGTGTGCGAGGACGGTCGAATGTGAACCG
____________________________________________________________
consensus GCCTCATCTGGAAATCGACTCGACGCCGGAGAGTGTGCGAGGACGGTCGAATGTGAACCG
. : . : . : . : . : . :
rJMFF004A17- CTAGAGCTCTCTTCGCTAATAAATCGTTCTCCACAGTGCCGATCCTCACGACCGAGCTCT
JMFN008J20+ CTAGAGCTCTCTTCGCTAATAAATCGTTCTCCACAGTGCCGATCCTCACGACCGAGCTCT
JMFF004A17+ CTAGAGCTCTCTTCGCTAATAAATCGTTCTCCACAGTGCCGATCCTCACGACCGAGCTCT
JMFF050O01+ CTAGAGCTCTCTTCGCTAATAAATCGTTCTCCACAGTGCCGATCCTCACGACCGAGCTCT
____________________________________________________________
consensus CTAGAGCTCTCTTCGCTAATAAATCGTTCTCCACAGTGCCGATCCTCACGACCGAGCTCT
. : . : . : . : . : . :
rJMFF004A17- TCCTACCGGATCTCCGCGTATACAAATGTTGATTCGAGAGATACGGCGTCGTCTGACCGT
JMFN008J20+ TCCTACCGGATCTCCGCGTATACAAATGTTGATTCGAGAGATACGGCGTCGTCTGACCGT
JMFF004A17+ TCCTACCGGATCTCCGCGTATACAAATGTTGATTCGAGAGATACGGCGTCGTCTGACCGT
JMFF050O01+ TCCTACCGGATCTCCGCGTATACAAATGTTGATTCGAGAGATACGGCGTCGTCTGACCGT
____________________________________________________________
consensus TCCTACCGGATCTCCGCGTATACAAATGTTGATTCGAGAGATACGGCGTCGTCTGACCGT
. : . : . : . : . : . :
rJMFF004A17- GACCCCGATGTTTGTGAAGGCTACACCGGAACGATCCCGGATGGATCGTCGGCGAGCACA
JMFN008J20+ GACCCCGATGTTTGTGAAGGCTACACCGGAACGATCCCGGATGGATCGTCGGCGAGCACA
JMFF004A17+ GACCCCGATGTTTGTGAAGGCTACACCGGAACGATCCCGGATGGATCGTCGGCGAGCACA
JMFF050O01+ GACCCCGATGTTTGTGAAGGCTACACCGGAACGATCCCGGATGGATCGTCGGCGAGCACA
____________________________________________________________
consensus GACCCCGATGTTTGTGAAGGCTACACCGGAACGATCCCGGATGGATCGTCGGCGAGCACA
. : . : . : . : . : . :
rJMFF004A17- TACAGGTTCTCTTCTGATTCGATTTTCGCGGCGAAACGGTAAGAGAGAATCGCACGGAA
JMFN008J20+ TACAGGTTCTCTTCTGATTCGATTTTCGCGGCGAAACGGTAAGAGAGAATCGCACGGAAG
JMFF004A17+ TACAGGTTCTCTTCTGATTCGATTTTCGCGGCGAAACGGTAAGAGAGAATCGCACGGAAG
JMFF050O01+ TACAGGTTCTCTTCTGATTCGATTTTCGCGGCGAAACGGTAAGAGAGAATCGCACGGAAG
____________________________________________________________
consensus TACAGGTTCTCTTCTGATTCGATTTTCGCGGCGAAACGGTAAGAGAGAATCGCACGGAAG
. : . : . : . : . : . :
JMFN008J20+ GCGACGGGGAGTGATTGACCCGGTTGGGCGATATGGATCGAGTCAATAGACTGCCATGTC
JMFF004A17+ GCGACGGGGAGTGATTGACCCGGTTGGGCGATATGGATCGAGTCAATAGACTGCCATGTC
JMFF050O01+ GCGACGGGGAGTGATTGACCCGGTTGGGCGATATGGATCGAGTCAATAGACTGCCATGTC
____________________________________________________________
consensus GCGACGGGGAGTGATTGACCCGGTTGGGCGATATGGATCGAGTCAATAGACTGCCATGTC
. : . : . : . : . : . :
JMFN008J20+ GGGTTGATGATGCGGAGGAGGAGCAGAAGCGATCTGACGGCGGTAATGAGCGGTGAAAGT
JMFF004A17+ GGGTTGATGATGCGGAGGAGGAGCAGAAGCGATCTGACGGCGGTAATGAGCGGTGAAAGT
JMFF050O01+ GGGTTGATGATGCGGAGGAGGAGCAGAAGCGATCTGACGGCGGTAATGAGCGGTGAAAGT
____________________________________________________________
consensus GGGTTGATGATGCGGAGGAGGAGCAGAAGCGATCTGACGGCGGTAATGAGCGGTGAAAGT
. : . : . : . : . : . :
JMFN008J20+ GGTGATGGAATTCTGGACGGTGGGATTTATCTCTAGACGATGACGGGCCCAGAAGAAACA
JMFF004A17+ GGTGATGGAATTCTGGACGGTGGGATTTATCTCTAGACGATGACGGGCCCAGAAGAAACA
JMFF050O01+ GGTGATGGAATTCTGGACGGTGGGATCTATCTCTAGACGATGACGGGCCCAGAAGAAACA
____________________________________________________________
consensus GGTGATGGAATTCTGGACGGTGGGATTTATCTCTAGACGATGACGGGCCCAGAAGAAACA
. : . : . : . : . : . :
JMFN008J20+ TTTTTAAAAGAAAAAAGAAAAATTATTAGA
JMFF004A17+ TTTTTAAAAGAAAAAAGAAAAATTATTAGAGAGCCGTTTGGCTCTCATTTTAAGCAAC
JMFF050O01+ TTTTTAAAAGAAAAAAGAAAAATTATTAGAGAGCCGTTTGGCTCTCATTTTAAGCAACCC
____________________________________________________________
consensus TTTTTAAAAGAAAAAAGAAAAATTATTAGAGAGCCGTTTGGCTCTCATTTTAAGCAACCC