Contig 003292:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008A09Sequence542003292 (3)717008387 (3)ref|XP_009767028.1|2e-82PREDICTED: probable protein phosphatase 2C 3 isoform X3 [Nicotiana sylvestris]
JMFF038F04Sequence503003292 (3)182008387 (3)gb|KDO38779.1|2e-05hypothetical protein CISIN_1g033174mg [Citrus sinensis]
JMFF049N17Sequence636003292 (3)630008387 (3)ref|XP_009767028.1|2e-55PREDICTED: probable protein phosphatase 2C 3 isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF049N17+                                  CCACATACCCATTCCAAGATTATCTCAGAATTCCCCC
                      ____________________________________________________________
consensus                                    CCACATACCCATTCCAAGATTATCTCAGAATTCCCCC
 
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JMFF008A09+                                                                  TACAG
JMFF049N17+           AAAAAAGCCCTAAAGTTTCAAACTTTACACCAACAAGTCAACAAAACACTAACCTTACAG
                      ____________________________________________________________
consensus             AAAAAAGCCCTAAAGTTTCAAACTTTACACCAACAAGTCAACAAAACACTAACCTTACAG
 
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JMFF008A09+           ATTCGAAAACCAAGAAAACCCCCCCCAGAAATGTGATCAAAGCTCAAGCAAAAGAACCTT
JMFF038F04+                                             GATCAAAGCTCAAGCAAAAGAACCTT
JMFF049N17+           ATTCGAAAACCAAGAAAA-CCCCCCCAGAAATGTGATCAAAGCTCAAGCAAAAGAACCTT
                      ____________________________________________________________
consensus             ATTCGAAAACCAAGAAAACCCCCCCCAGAAATGTGATCAAAGCTCAAGCAAAAGAACCTT
 
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JMFF008A09+           AAAATCTCCAAACAGAAATCAAGCAAGAAATCAGAGGATAATTGAAACACTGTTGTACTA
JMFF038F04+           AAAATCTCCAAACAGAAATCAAGCAAGAAATCAGAGGATAATTGAAACACTGTTGTACTA
JMFF049N17+           AAAATCTCCAAACAGAAATCAAGCAAGAAATCAGAGGATAATTGAAACACTGTTGTACTA
                      ____________________________________________________________
consensus             AAAATCTCCAAACAGAAATCAAGCAAGAAATCAGAGGATAATTGAAACACTGTTGTACTA
 
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JMFF008A09+           AGTTGACATTTATGATTTACCCCCCTTGCAAAGAAAGCCAAAATGCAGATCTGATAGTGA
JMFF038F04+           AGTTGACATTTATGATTTACCCCCCTTGCAAAGAAAGCCAAAATGCAGATCTGATAGTGA
JMFF049N17+           AGTTGACATTTATGATTTACCCCCCTTGCAAAGAAAGCCAAAATGCAGATCTGATAGTGA
                      ____________________________________________________________
consensus             AGTTGACATTTATGATTTACCCCCCTTGCAAAGAAAGCCAAAATGCAGATCTGATAGTGA
 
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JMFF008A09+           CAGCGAATTGGGATTTCACTCCCAATTTTTAAAAAACAGGGATATTCATTCAGCTTAAAA
JMFF038F04+           CAGCGAATTGGGATTTCACTCCCAATTTTTAAAAAACAGGGATATTCATTCAGCTTAAAA
JMFF049N17+           CAGCGAATTGGGATTTCACTCCCAATTTTTAAAAAACAGGGATATTCATTCAGCTTAAAA
                      ____________________________________________________________
consensus             CAGCGAATTGGGATTTCACTCCCAATTTTTAAAAAACAGGGATATTCATTCAGCTTAAAA
 
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JMFF008A09+           GAATAATAATGAGAGTAGTTCAACAAGAAAAACGCGGATTGATGACGAGGATTGAAGTGT
JMFF038F04+           GAATAATAATGAGAGTAGTTCAACAAGAAAAACGCGGATTGATGACGAGGATTGAAGTGT
JMFF049N17+           GAATAATAATGAGAGTAGTTCAACAAGAAAAACGCGGATTGATGACGAGGATTGAAGTGT
                      ____________________________________________________________
consensus             GAATAATAATGAGAGTAGTTCAACAAGAAAAACGCGGATTGATGACGAGGATTGAAGTGT
 
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JMFF008A09+           AATGAGGCAACATGGAAGCCCCATTAATTAAAACAAAAAACAAAAATTACGAAAGCCGAC
JMFF038F04+           AATGAGGCAACATGGAAGCCCCATTAATTAAAACAAAAAACAAAAATTACGAAAGCCGAC
JMFF049N17+           AATGAGGCAACATGGAAGCCCCATTAATTAAAACAAAAAACAAAAATTACGAAAGCCGAC
                      ____________________________________________________________
consensus             AATGAGGCAACATGGAAGCCCCATTAATTAAAACAAAAAACAAAAATTACGAAAGCCGAC
 
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JMFF008A09+           AAACATTCTAGTCTAGAGAAACAACAGATGTGATGAATTTACAAGAAAATGCCCAAAAGA
JMFF038F04+           AAACATTCTAGTCTAGAGAAACAACAGATGTGATGAATTTACAAGAAAATGCCCAAAAGA
JMFF049N17+           AAACATTCTAGTCTAGAGAAACAACAGATGTGATGAATTTACAAGAAAATGCCCAAAAGA
                      ____________________________________________________________
consensus             AAACATTCTAGTCTAGAGAAACAACAGATGTGATGAATTTACAAGAAAATGCCCAAAAGA
 
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JMFF008A09+           CAGCACGAGGGGCGCCACCGGCGGGGGAAACAAGGATGTTTCAAGGAGTGAAAATGCACA
JMFF038F04+           CAGCACGAGGGGCGCCACCGGCGGGGGAAACAAGGATGTTTCAAGGAGTGAAAATGCACA
JMFF049N17+           CAGCACGAGGGGCGCCACCGGCGGGGGAAACAAGGATGTTTCAAGGAGTGAAAATGCACA
                      ____________________________________________________________
consensus             CAGCACGAGGGGCGCCACCGGCGGGGGAAACAAGGATGTTTCAAGGAGTGAAAATGCACA
 
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JMFF008A09+           TTCCATTCCATGAGAGAAAAAAGAGAAGTTTGAAGTTGAATGGCTTTTTTCACTCCA   
JMFF038F04+           TTCCATTCCATGAGAGAAAAAAGAGAAGTTTGAAGTTGAATGGCTTTTTTCACTCCA   
JMFF049N17+           TTCCATTCCATGAGAGAAAAAAGAGAAGTTTGAAGTTGAATGGCTTTTTTCACTCCACGG
                      ____________________________________________________________
consensus             TTCCATTCCATGAGAGAAAAAAGAGAAGTTTGAAGTTGAATGGCTTTTTTCACTCCACGG