Contig 003281:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035K18Sequence596003281 (4)ref|XP_006361450.1|5e-21PREDICTED: vacuolar protein sorting-associated protein 4-like [Solanum tuberosu783006900 (3)ref|XP_006361499.1|2e-93PREDICTED: vacuolar protein sorting-associated protein 4B-like [Solanum tuberos
JMFF046P21Sequence590003281 (4)ref|XP_006361450.1|2e-13PREDICTED: vacuolar protein sorting-associated protein 4-like [Solanum tuberosu
JMSF014P10Sequence342003281 (4)781006900 (3)ref|XP_004249979.1|1e-111PREDICTED: vacuolar protein sorting-associated protein 4 isoform X1 [Solanum ly
JMSF029J08Sequence629003281 (4)ref|XP_006361450.1|7e-45PREDICTED: vacuolar protein sorting-associated protein 4-like [Solanum tuberosu750006900 (3)ref|XP_004249979.1|7e-119PREDICTED: vacuolar protein sorting-associated protein 4 isoform X1 [Solanum ly

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF029J08+ TTGCTGCAGGTCCATTACCCCCTCCCTCATCAAGAACTGCCCGAAT
                      ____________________________________________________________
consensus TTGCTGCAGGTCCATTACCCCCTCCCTCATCAAGAACTGCCCGAAT
 
. : . : . : . : . : . :
JMSF029J08+ CTCCTCAGCCCTCCTCAAATACTCAGTGAACTTCTGGGTAATTGCCTCCTTAACCTTTGG
                      ____________________________________________________________
consensus CTCCTCAGCCCTCCTCAAATACTCAGTGAACTTCTGGGTAATTGCCTCCTTAACCTTTGG
 
. : . : . : . : . : . :
JMSF029J08+ ATTCTTCTCATACTTTAAATGAGTCTTAAAATACTCCAATGCATTCATATACAAAGAAAA
JMFF035K18+ TAAAATACTCCAATGCATTCATATACAAAGAAAA
JMFF046P21+ TAAAATACTCCAATGCATTCATATACAAGNAAAA
                      ____________________________________________________________
consensus ATTCTTCTCATACTTTAAATGAGTCTTAAAATACTCCAATGCATTCATATACAAAGAAAA
 
. : . : . : . : . : . :
JMSF029J08+ GGCCTTTGCATAATTCCCAGCATTATCTTCCTCAACCGCTTGCTTCACATATGCTACTGC
JMFF035K18+ GGCCTTTGCATAATTCCCAGCATTATCTTCCTCAACCGCTTGCTTCACATATGCTACTGC
JMFF046P21+ GGCCTTTGCATAATTCCCAGCATATTCTTCCTCAACCGCTTGCTTCACATATGCTACTGC
                      ____________________________________________________________
consensus GGCCTTTGCATAATTCCCAGCATTATCTTCCTCAACCGCTTGCTTCACATATGCTACTGC
 
. : . : . : . : . : . :
JMSF029J08+ CTGCTCCTTAAAATTGCTATACATCCTTTCTTCACAAAAACCTCATAAAATTCCAAATAT
JMFF035K18+ CTGCTCCTTAAAATTGCTATACATCCTTTCTTCACAAAAACCTCATAAAATTCCAAATAT
JMFF046P21+ CTGCTCCTTAAAATTGCTATACATCCTTTCTTCACAAAAACCTCATAAAATTCCAAATAT
                      ____________________________________________________________
consensus CTGCTCCTTAAAATTGCTATACATCCTTTCTTCACAAAAACCTCATAAAATTCCAAATAT
 
. : . : . : . : . : . :
JMSF029J08+ ATCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
JMFF035K18+ ATCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
JMSF014P10+ TCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
JMFF046P21+ ATCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
                      ____________________________________________________________
consensus ATCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
 
. : . : . : . : . : . :
JMSF029J08+ AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
JMFF035K18+ AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
JMSF014P10+ AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
JMFF046P21+ AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
                      ____________________________________________________________
consensus AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
 
. : . : . : . : . : . :
JMSF029J08+ TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
JMFF035K18+ TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
JMSF014P10+ TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
JMFF046P21+ TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
                      ____________________________________________________________
consensus TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
 
. : . : . : . : . : . :
JMSF029J08+ TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
JMFF035K18+ TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
JMSF014P10+ TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
JMFF046P21+ TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
                      ____________________________________________________________
consensus TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
 
. : . : . : . : . : . :
JMSF029J08+ TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
JMFF035K18+ TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
JMSF014P10+ TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
JMFF046P21+ TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
                      ____________________________________________________________
consensus TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
 
. : . : . : . : . : . :
JMSF029J08+ TGTGGCGTGCGGG
JMFF035K18+ TGTGGCGTGCGGGATGGGAAATTTGAGAGAGAGAGAAAGTCTCCTATTCTTGATCGGTCT
JMSF014P10+ TGTGGCGTGCGG---GGGAAATTTGAGAGAGAGAGAAAGTCTCCT
JMFF046P21+ TGTGGCGTGCGGGATGGGAAATTTGAGAGAGAGAGAAAGTCTCCTATTCTTGATCGGTCT
                      ____________________________________________________________
consensus TGTGGCGTGCGGGATGGGAAATTTGAGAGAGAGAGAAAGTCTCCTATTCTTGATCGGTCT
 
. : . : . : . : . : . :
JMFF035K18+ CCGCTGTCCGCTGATTGATAGATACTTTCCTAATCGCGAAGCAGCACAGGCATTTCCATC
JMFF046P21+ CCGCTGTCCGCTGATTGATAGATACTTTCCTAATCGCGAAGCAGCACAGGCATTTCCATC
                      ____________________________________________________________
consensus CCGCTGTCCGCTGATTGATAGATACTTTCCTAATCGCGAAGCAGCACAGGCATTTCCATC