Contig 003264:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043C24Sequence618003264 (3)gb|KDO54132.1|7e-90hypothetical protein CISIN_1g012534mg [Citrus sinensis]650008319 (3)ref|XP_009794830.1|4e-69PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Nic
JMFF046F12Sequence499003264 (3)gb|KDO54132.1|1e-76hypothetical protein CISIN_1g012534mg [Citrus sinensis]386008319 (3)ref|XP_008242592.1|1e-28PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isof
JMSF043O11Sequence711003264 (3)gb|KDO54132.1|8e-40hypothetical protein CISIN_1g012534mg [Citrus sinensis]535008319 (3)ref|XP_009794830.1|2e-68PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Nic

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+                                          ACACTACAAGACCTCAATAATATCTGAGA
                      ____________________________________________________________
consensus                                            ACACTACAAGACCTCAATAATATCTGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           GTTGGTTTTTGGTTGTAATCTGCTTGATATCACCACCTGCAGGTAAAATGACACACAACG
                      ____________________________________________________________
consensus             GTTGGTTTTTGGTTGTAATCTGCTTGATATCACCACCTGCAGGTAAAATGACACACAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           ACTTCTGTGATCCATTGGGCTATAAAAATGATGTTGATAAAACTATACAAGTATATGACA
                      ____________________________________________________________
consensus             ACTTCTGTGATCCATTGGGCTATAAAAATGATGTTGATAAAACTATACAAGTATATGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           TCAATATCTGCAGCTAAGCTACAGTTTAAGTATGCAGCATGACCACAACACATTGAGAAT
                      ____________________________________________________________
consensus             TCAATATCTGCAGCTAAGCTACAGTTTAAGTATGCAGCATGACCACAACACATTGAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           TCGGCCAAAAGATAAGCATAGCTATTGGCTATTGGTTAATGGAAGGCTGTAGGAAAATTC
                      ____________________________________________________________
consensus             TCGGCCAAAAGATAAGCATAGCTATTGGCTATTGGTTAATGGAAGGCTGTAGGAAAATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           TCATGATGCCAGAAAAACCTTTGGAACAAGAGCAGTGGTTTTGTCCTTTTGAATTTCGGC
JMFF046F12+                           ACCTTTGGAACAAGAGCAGTGGTTTTGTCCTTTTGAATTTCGGC
JMFF043C24+                           ACCTTTGGAACAAGAGCAGTGGTTTTGTCCTTTTGAATTTCGGC
                      ____________________________________________________________
consensus             TCATGATGCCAGAAAAACCTTTGGAACAAGAGCAGTGGTTTTGTCCTTTTGAATTTCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           AACAACGCCCTTAATGTCCATTCCTGCACAAAAGGCACGTGGAGTGCTTCCCTCAATTAA
JMFF046F12+           AACAACGCCCTTAATGTCCATTCCTGCACAAAAGGCACGTGGAGTGCTTCCCTCAATTAA
JMFF043C24+           AACAACGCCCTTAATGTCCATTCCTGCACAAAAGGCACGTGGAGTGCTTCCCTCAATTAA
                      ____________________________________________________________
consensus             AACAACGCCCTTAATGTCCATTCCTGCACAAAAGGCACGTGGAGTGCTTCCCTCAATTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           GACACATTTCACCTTTGGGTCTGCTTCCCATTCATCCAAAAAGCTTTTATATCTG--ATC
JMFF046F12+           GACACATTTCACCTTTGGGTCTGCTTCCCATTCATCCAAAAAGCTTTTATATCTGATATC
JMFF043C24+           GACACATTTCACCTTTGGGTCTGCTTCCCATTCATCCAAAAAGCTTTTATATCTGATATC
                      ____________________________________________________________
consensus             GACACATTTCACCTTTGGGTCTGCTTCCCATTCATCCAAAAAGCTTTTATATCTGATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           CATATCTATGTTCATGGCGTTCAGAGCTTTTGGGCGGTCGAGGGTGATGACGGCGACGCC
JMFF046F12+           CATATCTATGTTCATGGCGTTCAGAGCTTTTGGGCGGTCGAGGGTGATGACGGCGACGCC
JMFF043C24+           CATATCTATGTTCATGGCGTTCAGAGCTTTTGGGCGGTCGAGGGTGATGACGGCGACGCC
                      ____________________________________________________________
consensus             CATATCTATGTTCATGGCGTTCAGAGCTTTTGGGCGGTCGAGGGTGATGACGGCGACGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           ATTCGGGTGAACATTTCCTTTGACGAACTCATCGGAGCTGCTCGAAGCCATGATCGCGAA
JMFF046F12+           ATTCGGGTGAACATTTCCTTTGACGAACTCATCGGAGCTGCTCGAAGCCATGATCGCGAA
JMFF043C24+           ATTCGGGTGAACATTTCCTTTGACGAACTCATCGGAGCTGCTCGAAGCCATGATCGCGAA
                      ____________________________________________________________
consensus             ATTCGGGTGAACATTTCCTTTGACGAACTCATCGGAGCTGCTCGAAGCCATGATCGCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           GGTCCGGAAAGAGGGAAACTGCGGCGTATTTGAGTATCTAGCTCCGGCACGAAATAACGA
JMFF046F12+           GGTCCGGAAAGAGGGAAACTGCGGCGTATTTGAGTATCTAGCTCCGGCACGAAATAACGA
JMFF043C24+           GGTCCGGAAAGAGGGAAACTGCGGCGTATTTGAGTATCTAGCTCCGGCACGAAATAACGA
                      ____________________________________________________________
consensus             GGTCCGGAAAGAGGGAAACTGCGGCGTATTTGAGTATCTAGCTCCGGCACGAAATAACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           AGAGACGGAGCCGGCGACGAGAGCGGCGGCGGTCGATCGGCTTAGATTTAGCAAATGCTG
JMFF046F12+           AGAGACGGAGCCGGCGACGAGAGCGGCGGCGGTCGATCGGCTTAGATTT           
JMFF043C24+           AGAGACGGAGCCGGCGACGAGAGCGGCGGCGGTCGATCGGCTTAGATTTAGCAAATGCTG
                      ____________________________________________________________
consensus             AGAGACGGAGCCGGCGACGAGAGCGGCGGCGGTCGATCGGCTTAGATTTAGCAAATGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O11+           CGAAGCTCCAAACAACTGTCTTT                                     
JMFF043C24+           CGAAGCTCCAAACAACTGTCTTTGCATCGTTTTTGGTGAGAAAGTTACAAGTCGGAGAGT
                      ____________________________________________________________
consensus             CGAAGCTCCAAACAACTGTCTTTGCATCGTTTTTGGTGAGAAAGTTACAAGTCGGAGAGT