| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003G03 | Sequence | 526 | 003237 (10) | ref|XP_009776015.1| | 6e-10 | PREDICTED: transcription factor bHLH79 isoform X4 [Nicotiana sylvestris] | 764 | 003237 (10) | ref|XP_009593799.1| | 2e-72 | PREDICTED: transcription factor bHLH79 isoform X1 [Nicotiana tomentosiformis] |
| JMFF003L02 | Sequence | 702 | 003237 (10) | ref|XP_009593799.1| | 2e-82 | PREDICTED: transcription factor bHLH79 isoform X1 [Nicotiana tomentosiformis] | |||||
| JMFF003N19 | Sequence | 391 | 003237 (10) | 565 | 003237 (10) | ref|XP_009776013.1| | 5e-71 | PREDICTED: transcription factor bHLH79 isoform X2 [Nicotiana sylvestris] | |||
| JMFF007O10 | Sequence | 547 | 003237 (10) | ref|XP_009776015.1| | 3e-04 | PREDICTED: transcription factor bHLH79 isoform X4 [Nicotiana sylvestris] | 710 | 003237 (10) | ref|XP_009776015.1| | 6e-04 | PREDICTED: transcription factor bHLH79 isoform X4 [Nicotiana sylvestris] |
| JMFF037P04 | Sequence | 544 | 003237 (10) | ref|XP_009776015.1| | 6e-08 | PREDICTED: transcription factor bHLH79 isoform X4 [Nicotiana sylvestris] | 754 | 003237 (10) | ref|XP_009776012.1| | 2e-78 | PREDICTED: transcription factor bHLH79 isoform X1 [Nicotiana sylvestris] |
| JMFN008K21 | Sequence | 640 | 003237 (10) | ref|XP_009776012.1| | 5e-91 | PREDICTED: transcription factor bHLH79 isoform X1 [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF003L02- ATTTT
rJMFF037P04- TATTTT
____________________________________________________________
consensus TATTTT
. : . : . : . : . : . :
rJMFF003L02- TTATTTTTATTTTTTTTTAC-AAAGAGAATAAAAGCAATTTATATTTAAGAATAAAAGCA
JMFN008K21+ GAATAAAAGCAATTTATATTTAAGAATAAAAGCA
rJMFF003N19- TATTTAANAATAAAAGCA
rJMFF037P04- TTATTTTTATTTTTTTTTACAAAAGAGAATAAAAGCAATTTATATTTAAGAATAAAAGCA
____________________________________________________________
consensus TTATTTTTATTTTTTTTTACAAAAGAGAATAAAAGCAATTTATATTTAAGAATAAAAGCA
. : . : . : . : . : . :
rJMFF003L02- CTCCAAAAAAGCTGCAGCACTGAGACAAGCCCTTTAATGCTCTTATTCAGAACTAGCAAG
JMFN008K21+ CTCCAAAAAAGCTGCAGCACTGAGACAAGCCCTTTAATGCTCTTATTCAGAACTAGCAAG
rJMFF003N19- CTCCAAAAAAGCTGCANCACTGAGACAANCCCTTTNATGCTCTTATTCANAACTANCAAG
rJMFF037P04- CTCCAAAAAAGCTGCAGCACTGAGACAAGCCCTTTAATGCTCTTATTCAGAACTAGCAAG
____________________________________________________________
consensus CTCCAAAAAAGCTGCAGCACTGAGACAAGCCCTTTAATGCTCTTATTCAGAACTAGCAAG
. : . : . : . : . : . :
rJMFF003L02- AATTGCAGTGTGCTGTTTATTCATGTTCTTTCAAATCCACCTCCAGTCTGCATATGTAAC
JMFN008K21+ AATTGCAGTGTGCTGTTTATTCATGTTCTTTCAAATCCACCTCCAGTCTGCATATGTAAC
rJMFF003N19- AATTGCNGNGTGCTGNTTATTCATGTTCTTTCAAATCCACCTCCAGNCTGCNTATGTAAC
rJMFF037P04- AATTGCAGTGTGCTGTTTATTCATGTTCTTTCAAATCCACCTCCAGTCTGCATATGTAAC
____________________________________________________________
consensus AATTGCAGTGTGCTGTTTATTCATGTTCTTTCAAATCCACCTCCAGTCTGCATATGTAAC
. : . : . : . : . : . :
rJMFF003L02- CAATCAGGTGATGTGCTGCTACCATATTCCCTTGTAGCTTGCGAACCGAACGCCAAGCCA
JMFN008K21+ CAATCAGGTGATGTGCTGCTACCATATTCCCTTGTAGCTTGCGAACCGAACGCCAAGCCA
rJMFF003N19- CAATCAGGTGATGTGCTGCTACCNTATTCCCTTGTANCTTGCGAACCGAACGCCAAGCNA
rJMFF037P04- CAATCAGGTGATGTGCTGCTACCATATTCCCTTGTAGCTTGCGAACCGAACGCCAAGCCA
rJMFF003G03- ATATTCCCTTGTAGCTTGCGAACCGAACGCCAAGCCA
____________________________________________________________
consensus CAATCAGGTGATGTGCTGCTACCATATTCCCTTGTAGCTTGCGAACCGAACGCCAAGCCA
. : . : . : . : . : . :
rJMFF003L02- GATGTATCGAAGATTTGCGGGGGAAAATCTTTTGATGGTAATCCTTCAATCCCGGGGGGT
JMFN008K21+ GATGTATCGAAGATTTGCGGGGGAAAATCTTTTGATGGTAATCCTTCAATCCCGGGGGGT
rJMFF003N19- GATGTATCGAANATTTGCGGNGGAAAATCTTTTGATGGTAATCCTTCNATCCCGGGGGGT
rJMFF037P04- GATGTATCGAAGATTTGCGGGGGAAAATCTTTTGATGGTAATCCTTCAATCCCGGGGGGT
rJMFF003G03- GATGTATCGAAGATTTGCGGGGGAAAATCTTTTGATGGTAATCCTTCAATCCCGGGGGGT
____________________________________________________________
consensus GATGTATCGAAGATTTGCGGGGGAAAATCTTTTGATGGTAATCCTTCAATCCCGGGGGGT
. : . : . : . : . : . :
rJMFF003L02- ATTCTTGAATTCACTGCCTCGAGCTTCATTGATAGAAACTCGACTTGGTGTTGTAATGAT
JMFN008K21+ ATTCTTGAATTCACTGCCTCGAGCTTCATTGATAGAAACTCGACTTGGTGTTGTAATGAT
rJMFF003N19- ATTCTTGAATTCNCTGCCTCNAGCTTCATTGANANAAACTCNACTTGGTGTTGTAATGAT
rJMFF037P04- ATTCTTGAATTCACTGCCTCGAGCTTCATTGATAGAAACTCGACTTGGTGTTGTAATGAT
rJMFF003G03- ATTCTTGAATTCACTGCCTCGAGCTTCATTGATAGAAACTCGACTTGGTGTTGTAATGAT
____________________________________________________________
consensus ATTCTTGAATTCACTGCCTCGAGCTTCATTGATAGAAACTCGACTTGGTGTTGTAATGAT
. : . : . : . : . : . :
rJMFF003L02- TGGACATAATTAATTATCTCATCAAGGACCGACGCTTTGCCAATAACCTTGTTGCAGCCA
JMFN008K21+ TGGACATAATTAATTATCTCATCAAGGACCGACGCTTTGCCAATAACCTTGTTGCAGCCA
rJMFF003N19- TGGACATAATTAATTATCTCATCNAGGACCGACGCTTTGCCAATAACCTTGTTGCAGCCA
rJMFF037P04- TGGACATAATTAATTATCTCATCAAGGACCGACGCTTTGCCAATAACCTTGTTGCAGCCA
rJMFF003G03- TGGACATAATTAATTATCTCATCAAGGACCGACGCTTTGCCAATAACCTTGTTGCAGCCA
____________________________________________________________
consensus TGGACATAATTAATTATCTCATCAAGGACCGACGCTTTGCCAATAACCTTGTTGCAGCCA
. : . : . : . : . : . :
rJMFF003L02- GGGACTAAATTTTGTAGAATTTTCATCCTCTCGCTTATTTTCTCTCTCCTAGCTCTTTCT
JMFN008K21+ GGGACTAAATTTTGTAGAATTTTCATCCTCTCGCTTATTTTCTCTCTCCTAGCTCTTTCT
rJMFF003N19- NGGACTAAATTTTGAANAATTTTCATCCTCTCGCTTATTTTCTCTCTCCTANCTCTTTCT
rJMFF037P04- GGGACTAAATTTTGTAGAATTTTCATCCTCTCGCTTATTTTCTCTCTCCTAGCTCTTTCT
rJMFF003G03- GGGACTAAATTTTGTAGAATTTTCATCCTCTCGCTTATTTTCTCTCTCCTAGCTCTTTCT
____________________________________________________________
consensus GGGACTAAATTTTGTAGAATTTTCATCCTCTCGCTTATTTTCTCTCTCCTAGCTCTTTCT
. : . : . : . : . : . :
rJMFF003L02- GCTAGGCTGTGACTATCAGTTGCTTGTCCCCTCCTAGCTCTAACATGAATGTAATCTTTA
JMFN008K21+ GCTAGGCTGTGACTATCAGTTGCTTGTCCCCTCCTAGCTCTAACATGAATGTAATCTTTA
rJMFF003N19- GCTAGGCTGTGACTATCAGNTGCTTGNCCCCTCCTANCTCTAACATGAATGTAATCTTTA
rJMFF037P04- GCTAGGCTGTGACTATCAGTTGCTTGTCCCCTCCTAGCTCTAACATGAATGTAATCTTTA
rJMFF003G03- GCTAGGCTGTGACTATCAGTTGCTTGTCCCCTCCTAGCTCTAACATGAATGTAATCTTTA
JMFF003G03+ CCTAGCTCTAACATGAATGTAATCTTTA
____________________________________________________________
consensus GCTAGGCTGTGACTATCAGTTGCTTGTCCCCTCCTAGCTCTAACATGAATGTAATCTTTA
. : . : . : . : . : . :
rJMFF003L02- GGCGGTTCCGCTGCCTTTGCAGCTTGTTCTGCTTGCTTTCCAGAAGCTCCTTCCCCATCA
JMFN008K21+ GGCGGTTCCGCTACCTTTGCAGCTTGTTCTGCTTGCTTTCCAGAAGCTCCTTCCCCATCA
rJMFF003N19- GGCGGNTCCGCTGCCTTTGCAGNTTGTNCTGNTTGCTTTCNAGAAGCTCCTTCCCCATCA
rJMFF037P04- GGCGGTTCCGCTGCCTTTGCAGCTTGTTCTGCTTGCTTTCCAGAAGCTCCTTCCCCATCA
rJMFF003G03- GGCGGTTCCGCTGCCTTTGCAGCTTGTTCTGCTTGCTTTCCAGAAGCTCCTTCCCCATCA
JMFF003G03+ GGCGGTTCCGCTGCCTTTGCAGCTTGTTCTGCTTGCTTTCCAGAAGCTCCTTCCCCATCA
JMFF037P04+ CCCATCA
____________________________________________________________
consensus GGCGGTTCCGCTGCCTTTGCAGCTTGTTCTGCTTGCTTTCCAGAAGCTCCTTCCCCATCA
. : . : . : . : . : . :
rJMFF003L02- GCTTTGGACCGAGGAATCTTGTTCTGTCCACCGGTCTTTAACCGTTTACTGTCATCTTCA
JMFN008K21+ GCTTTGGACCGAGGAATCTTGTTCTGTCCACCGGTCTTTAACCGTTTACTGTCATCTTCA
rJMFF037P04- GCTTTGGACCGAGGAATCTTGTTCTGTCCACCGGTCTTTAACCGTTTACTGTCATCTTCA
rJMFF003G03- GCTTTGGACCGAGGAATCTTGTTCTGTCCACCGGTCTTTAACCGTTTACTGTCATCTTCA
JMFF003N19+ TACTGTCATCTTCA
JMFF003G03+ GCTTTGGACCGAGGAATCTTGTTCTGTCCACCGGTCTTTAACCGTTTACTGTCATCTTCA
JMFF037P04+ GCTTTGGACCGAGGAATCTTGTTCTGTCCACCGGTCTTTAACCGTTTACTGTCATCTTCA
____________________________________________________________
consensus GCTTTGGACCGAGGAATCTTGTTCTGTCCACCGGTCTTTAACCGTTTACTGTCATCTTCA
. : . : . : . : . : . :
rJMFF003L02- CTCTGCAAGCCGTTGCCGCTAGTCGANGCTCCCGCTCC
JMFN008K21+ CTC
rJMFF037P04- CT---CAAGCCGTTGCCGCTAGTCGAGGCTCCCGCTCCTCCCTTAGCAGATTCATCCTCC
rJMFF003G03- CTCTGCAAGCCGTTGCCGCTAGTCGAGGCTCCCGCTCCTCCCTTAGCAGATTCATCCTCC
JMFF003N19+ CTCTGCAAGCCGTTGCCGCTAGTCGAGGCTCCCGCTCCTCCCTTAGCAGATTCATCCTCC
JMFF003G03+ CTCTGCAAGCCGTTGCCGCTAGTCGAGGCTCCCGCTCCTCCCTTAGCAGATTCATCCTCC
JMFF007O10+ CAAGCCGTTGCCGCTAGTCGAGGCTCCCGCTCCTCCCTTAGCAGATTCATCCTCC
rJMFF007O10- CAAGCCGTTGCCGCTAGTCGAGGCTCCCGCTCCTCCCTTAGCAGATTCATCCTCC
JMFF037P04+ CT---CAAGCCGTTGCCGCTAGTCGAGGCTCCCGCTCCTCCCTTAGCAGATTCATCCTCC
____________________________________________________________
consensus CTCTGCAAGCCGTTGCCGCTAGTCGAGGCTCCCGCTCCTCCCTTAGCAGATTCATCCTCC
. : . : . : . : . : . :
rJMFF037P04- TCCTTGCGCTTCCG
rJMFF003G03- TCCTTGCGCTTCCGTCCTCCGCCGTCGCCGCCGCTCTGACT
JMFF003N19+ TCCTTGCGCTTCCGTCCTCCGCCGTCGCCGCCGCTCTGACTCACTCTCCGGTCGATAACC
JMFF003G03+ TCCTTGCGCTTCCGTCCTCCGCCGTCGCCGCCGCTCTGACTCACTCTCCGGTCGATAACC
JMFF007O10+ TCCTTGCGCTTCCGTCCTCCGCCGTCGCCGCCGCTCTGACTCACTCTCCGGTCGATAACC
rJMFF007O10- TCCTTGCGCTTCCGTCCTCCGCCGTCGCCGCCGCTCTGACTCACTCTCCGGTCGATAACC
JMFF037P04+ TCCTTGCGCTTCCGTCCTCCGCCGTCGCCGCCGCTCTGACTCACTCTCCGGTCGATAACC
____________________________________________________________
consensus TCCTTGCGCTTCCGTCCTCCGCCGTCGCCGCCGCTCTGACTCACTCTCCGGTCGATAACC
. : . : . : . : . : . :
JMFF003N19+ ATGGGATCACTCATCGCATTCACATCCTCCTCCGCCGGCGCCAACGCATACGGCGACGTC
JMFF003G03+ ATGGGATCACTCATCGCATTCACATCCTCCTCCGCCGGCGCCAACGCATACGGCGACGTC
JMFF007O10+ ATGGGATCACTCATCGCATTCACATCCTCCTCCGCCGGCGCCAACGCATACGGCGACGTC
rJMFF007O10- ATGGGATCACTCATCGCATTCACATCCTCCTCCGCCGGCGCCAACGCATACGGCGACGTC
JMFF037P04+ ATGGGATCACTCATCGCATTCACATCCTCCTCCGCCGGCGCCAACGCATACGGCGACGTC
____________________________________________________________
consensus ATGGGATCACTCATCGCATTCACATCCTCCTCCGCCGGCGCCAACGCATACGGCGACGTC
. : . : . : . : . : . :
JMFF003N19+ GCTCCTCCGGTACTGATCGGAAACGGCTAGATCTCCGCCATATTAAACTGCGCGTTGCTG
JMFF003G03+ GCTCCTCCGGTACTGATCGGAAACGGCCAGATCTCCGCCATATTAAACTGCGCGTTGCTG
JMFF007O10+ GCTCCTCCGGTACTGATCGGAAACGGCCAGATCTCCGCCATATTAAACTGCGCGTTGCTG
rJMFF007O10- GCTCCTCCGGTACTGATCGGAAACGGCCAGATCTCCGCCATATTAAACTGCGCGTTGCTG
JMFF037P04+ GCTCCTCCGGTACTGATCGGAAACGGCCAGATCTCCGCCATATTAAACTGCGCGTTGCTG
____________________________________________________________
consensus GCTCCTCCGGTACTGATCGGAAACGGCCAGATCTCCGCCATATTAAACTGCGCGTTGCTG
. : . : . : . : . : . :
JMFF003N19+ GAACCAGGGTAAGCTCCTCCGTCATTCAACATCGGATCCGTCTCGCTCCGGAACTTATAA
JMFF003G03+ GAACCAGGGTAAGCTCCTCCGTCATTCAACATCGGATCCGTCTCGCTCCGGAACTTATAA
JMFF007O10+ GAACCAGGGTAAGCTCCTCCGTCATTCAACATCGGATCCGTCTCGCTCCGGAAATTATAA
rJMFF007O10- GAACCAGGGTAAGCTCCTCCGTCATTCAACATCGGATCCGTCTCGCTCCGGAAATTATAA
JMFF037P04+ GAACCAGGGTAAGCTCCTCCGTCATTCAACATCGGATCCGTCTCGCTCCGGAACTTATAA
____________________________________________________________
consensus GAACCAGGGTAAGCTCCTCCGTCATTCAACATCGGATCCGTCTCGCTCCGGAACTTATAA
. : . : . : . : . : . :
JMFF003N19+ ACCACGCCGCAACGGCTATGAATCAACTGGAATTCGTTCAAACAGGAAGCGAAGATATAG
JMFF003G03+ ACCACGCCGCAACGGCTATGAATCAA-TGGAATTCGTTCAAACAGGAAGCGAAGATATAG
JMFF007O10+ ACCACGCCGCAACGGCTATGAATCAACTGGAATTCGTTCAAACAGGAAGCGAAGATATAG
rJMFF007O10- ACCACGCCGCAACGGCTATGAATCAACTGGAATTCGTTCAAACAGGAAGCGAAGATATAG
JMFF037P04+ ACCACGCCGCAACGGCTATGAATCAACTGGAATTCGTTCAAACAGGAAGCGAAGATATAG
____________________________________________________________
consensus ACCACGCCGCAACGGCTATGAATCAACTGGAATTCGTTCAAACAGGAAGCGAAGATATAG
. : . : . : . : . : . :
JMFF003N19+ GGAGGGAAAAAACATAT
JMFF003G03+ GGAGGGAAAAAACACATGC
JMFF007O10+ AGAGGGAAAAAACATATGCAATTATGCAGTGCTCAGTGTGATCTACTTGAAGAATGGAGA
rJMFF007O10- AGAGGGAAAAAACATATGCAATTATGCAGTGCTCAGTGTGATCTACTTGAAGAATGGAGA
JMFF037P04+ GGAGGGAAAAAACATATGCAATTATGCAGTGCTCAGTGTGATCTACTTGAAGAATGGAGA
____________________________________________________________
consensus GGAGGGAAAAAACATATGCAATTATGCAGTGCTCAGTGTGATCTACTTGAAGAATGGAGA
. : . : . : . : . : . :
JMFF007O10+ TTACTGCGCCGCCCACTGTCGTACACTGGAGAGTGGAGACCACCACCGCTAAC
rJMFF007O10- TTACTGCGCCGCCCACTGTCGTACACTGGAGAGTGGAGACCACCACCGCTAAC
JMFF037P04+ TTACTGCGCCGCCCACTGTCGTACACTGGAGAGTGGAGACCACCACCGCTAACACCATTC
____________________________________________________________
consensus TTACTGCGCCGCCCACTGTCGTACACTGGAGAGTGGAGACCACCACCGCTAACACCATTC