Contig 003235:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008E11Sequence589003235 (3)ref|XP_010265997.1|9e-83PREDICTED: metal transporter Nramp6-like isoform X2 [Nelumbo nucifera]
JMFF017G15Sequence571003235 (3)ref|XP_010265997.1|8e-81PREDICTED: metal transporter Nramp6-like isoform X2 [Nelumbo nucifera]797011031 (3)emb|CDP20210.1|2e-92unnamed protein product [Coffea canephora]
JMFF037K16Sequence532003235 (3)ref|XP_010265997.1|8e-73PREDICTED: metal transporter Nramp6-like isoform X2 [Nelumbo nucifera]716011031 (3)emb|CDP20210.1|3e-83unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF017G15+                                        GGGCATGTACCATTACACTGAAGAAGCACCC
JMFF008E11+                      TGTCCTTCACATTAGGCTGGGCATGTACCATTACACTGAAGAAGCACCC
                      ____________________________________________________________
consensus                        TGTCCTTCACATTAGGCTGGGCATGTACCATTACACTGAAGAAGCACCC
 
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JMFF017G15+           CCCTACAATCATCAATAGTACTGCAATTGCTAGTTCTAGCTTTCGTATGCCATATTTCTG
JMFF008E11+           CCCTACAATCATCAATAGTACTGCAATTGCTAGTTCTAGCTTTCGTATGCCATATTTCTG
JMFF037K16+                   TCATCAATAGTACTGCAATTGCTAGTTCTAGCTTTCGTATGCCATATTTCTG
                      ____________________________________________________________
consensus             CCCTACAATCATCAATAGTACTGCAATTGCTAGTTCTAGCTTTCGTATGCCATATTTCTG
 
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JMFF017G15+           TAGCCCAAGAAGCAGAAGAGTATTCAATCCAGCCAGCATGACCCCAGACCATAACGGTAT
JMFF008E11+           TAGCCCAAGAAGCAGAAGAGTATTCAATCCAGCCAGCATGACCCCAGACCATAACGGTAT
JMFF037K16+           TAGCCCAAGAAGCAGAAGAGTATTCAATCCAGCCAGCATGACCCCAGACCATAACGGTAT
                      ____________________________________________________________
consensus             TAGCCCAAGAAGCAGAAGAGTATTCAATCCAGCCAGCATGACCCCAGACCATAACGGTAT
 
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JMFF017G15+           ATTGAGGAGTAATTTGAGAGCAAAAGCGATGCCTATCACTTGTGGGATGTCGGCAGCTAT
JMFF008E11+           ATTGAGGAGTAATTTGAGAGCAAAAGCGATGCCTATCACTTGTGGGATGTCGGCAGCTAT
JMFF037K16+           ATTGAGGAGTAATTTGAGAGCAAAAGCGATGCCTATCACTTGTGGGATGTCGGCAGCTAT
                      ____________________________________________________________
consensus             ATTGAGGAGTAATTTGAGAGCAAAAGCGATGCCTATCACTTGTGGGATGTCGGCAGCTAT
 
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JMFF017G15+           GACGGAAACTTCAGCCAGTATCCAGAGACAGTAAGTCACTGGCTTTGGATATTCGTCCTT
JMFF008E11+           GACGGAAACTTCAGCCAGTATCCAGAGACAGTAAGTCACTGGCTTTGGATATTCGTCCTT
JMFF037K16+           GACGGAAACTTCAGCCAGTATCCAGAGACAGTAAGTCACTGGCTTTGGATATTCGTCCTT
                      ____________________________________________________________
consensus             GACGGAAACTTCAGCCAGTATCCAGAGACAGTAAGTCACTGGCTTTGGATATTCGTCCTT
 
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JMFF017G15+           GCAATGCTCAGACAGATGCCTTCCTGTTGCTACTCCAAGATTTGCTGAGCGAGATTGGAT
JMFF008E11+           GCAATGCTCAGACAGATGCCTTCCTGTTGCTACTCCAAGATTTGCTGAGCGAGATTGGAT
JMFF037K16+           GCAATGCTCAGACAGATGCCTTCCTGTTGCTACTCCAAGATTTGCTGAGCGAGATTGGAT
                      ____________________________________________________________
consensus             GCAATGCTCAGACAGATGCCTTCCTGTTGCTACTCCAAGATTTGCTGAGCGAGATTGGAT
 
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JMFF017G15+           TATAAGTGCAAATGCCAGTCCGAGGAGCACGATCCATAGCAACTCGTATTTGTGGTCAGC
JMFF008E11+           TATAAGTGCAAATGCCAGTCCGAGGAGCACGATCCATAGCAACTCGTATTTGTGGTCAGC
JMFF037K16+           TATAAGTGCAAATGCCAGTCCGAGGAGCACGATCCATAGCAACTCGTATTTGTGGTCAGC
                      ____________________________________________________________
consensus             TATAAGTGCAAATGCCAGTCCGAGGAGCACGATCCATAGCAACTCGTATTTGTGGTCAGC
 
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JMFF017G15+           TCCTGCTTGCAAATCTGTCTCCAAGTTTCCAGGATCAAGATAGGCTACTGAGACCAGTAA
JMFF008E11+           TCCTGCTTGCAAATCTGTCTCCAAGTTTCCAGGATCAAGATAGGCTACTGAGACCAGTAA
JMFF037K16+           TCCTGCTTGCAAATCTGTCTCCAAGTTTCCAGGATCAAGATAGGCTACTGAGACCAGTAA
                      ____________________________________________________________
consensus             TCCTGCTTGCAAATCTGTCTCCAAGTTTCCAGGATCAAGATAGGCTACTGAGACCAGTAA
 
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JMFF017G15+           ACCAGGACCTACATAGCTCAAGAACTTCTTCCAAGTTGGGGTCTCTTGTATTTGCACCAA
JMFF008E11+           ACCAGGACCTACATAGCTCAAGAACTTCTTCCAAGTTGGGGTCTCTTGTATTTGCACCAA
JMFF037K16+           ACCAGGACCTACATAGCTCAAGAACTTCTTCCAAGTTGGGGTCTCTTGTATTTGCACCAA
                      ____________________________________________________________
consensus             ACCAGGACCTACATAGCTCAAGAACTTCTTCCAAGTTGGGGTCTCTTGTATTTGCACCAA
 
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JMFF017G15+           AGAGCCCATTTCGTTCACAGTTTTGCCTTCTTTTCTTCGACCCACCTGCCCAATTCAAGT
JMFF008E11+           AGAGCCCATTTCGTTCACAGTTTTGCCTTCTTTTCTTCGACCCACCTGCCCAATTCAAGT
JMFF037K16+           AGAGCCCATTTCGTTCACAGTTTTGCCTTCTTTTCTTCGACCCACCTGCCCAATTCAAGT
                      ____________________________________________________________
consensus             AGAGCCCATTTCGTTCACAGTTTTGCCTTCTTTTCTTCGACCCACCTGCCCAATTCAAGT