| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007O22 | Sequence | 209 | 003230 (7) | 838 | 008152 (8) | ref|XP_008245916.1| | 3e-122 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume] | |||
| JMFF025M18 | Sequence | 572 | 003230 (7) | ref|XP_009616625.1| | 4e-70 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom | 734 | 008152 (8) | ref|XP_008245916.1| | 3e-118 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume] |
| JMFF035D06 | Sequence | 538 | 003230 (7) | ref|XP_009616625.1| | 5e-71 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom | 659 | 008152 (8) | ref|XP_011081701.1| | 4e-95 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum] |
| JMFF036E11 | Sequence | 557 | 003230 (7) | ref|XP_009780253.1| | 9e-77 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl | 536 | 008152 (8) | ref|XP_011081701.1| | 4e-95 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum] |
| JMFF039E06 | Sequence | 603 | 003230 (7) | ref|XP_009616625.1| | 2e-78 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom | 691 | 008152 (8) | ref|XP_011081701.1| | 7e-107 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum] |
| JMFF043C23 | Sequence | 643 | 003230 (7) | ref|XP_009780253.1| | 1e-97 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl | 518 | 008152 (8) | ref|XP_007012245.1| | 1e-61 | Serine hydroxymethyltransferase 3 isoform 2, partial [Theobroma cacao] gb|EOY29 |
| JMSF001L23 | Sequence | 281 | 003230 (7) | ref|XP_009780253.1| | 9e-15 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl | 712 | 008152 (8) | ref|XP_008245916.1| | 8e-110 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume] |
This contig is upended
. : . : . : . : . : . :
JMFF039E06+ AACC
JMFF043C23+ GATTAAGAATGGCAGTATAAACTTCAAAATNTGCTGGAGAACC
____________________________________________________________
consensus GATTAAGAATGGCAGTATAAACTTCAAAATNTGCTGGAGAACC
. : . : . : . : . : . :
JMFF039E06+ AGACAATGGCTGAACATTTACACCCCATTTGCTTCCATCTAAGTTAAATGCTGCCAATGC
JMFF043C23+ AGACAATGGCTGAACATTTACACCCCATTTGCTTCCATCTAAGTTAAATGCTGCCAATGC
JMFF025M18+ TTTGCTTCCATCTAAGTTAAATGCTGCCAATGC
JMFF036E11+ TTAAATGCTGCCAATGC
____________________________________________________________
consensus AGACAATGGCTGAACATTTACACCCCATTTGCTTCCATCTAAGTTAAATGCTGCCAATGC
. : . : . : . : . : . :
JMFF039E06+ CCTTTCTTGACAAAGAATCTCTAGCTCATCAATGTATTCATTCCCACCATAGTACCTTTT
JMFF043C23+ CCTTTCTTGACAAAGAATCTCTAGCTCATCAATGTATTCATTCCCACCATAGTACCTTTT
JMFF025M18+ CCTTTCTTGACAAAGAATCTCTAGCTCATCAATGTATTCATTCCCACCATAGTACCTTTT
JMFF035D06+ TTTCTTGACAAAGAATCTGTAGCTCATCAATGTATTCATTCCCACCATAGTACCTTTN
JMFF036E11+ CCTTTCTTGACAAAGAATCTCTAGCTCATCAATGTATTCATTCCCACCATAGTACCTTTT
____________________________________________________________
consensus CCTTTCTTGACAAAGAATCTCTAGCTCATCAATGTATTCATTCCCACCATAGTACCTTTT
. : . : . : . : . : . :
JMFF039E06+ GCCAGGAAGTCCTTCAGAATATTTGTTTGTGAGGCAAGAGCCAACTGCTTCCATCACTGC
JMFF043C23+ GCCAGGAAGTCCTTCAGAATATTTGTTTGTGAGGCAAGAGCCAACTGCTTCCATCACTGC
JMFF025M18+ GCCAGGAAGTCCTTCAGAATATTTGTTTGTGAGGCAAGAGCCAACTGCTTCCATCACTGC
JMFF035D06+ GCCAGGAAGTCCTTCAGAATATTTGTTTGTGAGGCAAGAGCCAACTGCTTCCATCACTGC
JMFF036E11+ GCCAGGAAGTCCTTCAGAATATTTGTTTGTGAGGCAAGAGCCAACTGCTTCCATCACTGC
____________________________________________________________
consensus GCCAGGAAGTCCTTCAGAATATTTGTTTGTGAGGCAAGAGCCAACTGCTTCCATCACTGC
. : . : . : . : . : . :
JMFF039E06+ TCGTGATGTGAAATTCTCTGAGGCAATGAGCTCTAAGCTTCTAAATTGACGATCTTTCTC
JMFF043C23+ TCGTGATGTGAAATTCTCTGAGGCAATGAGCTCTAAGCTTCTAAATTGACGATCTTTCTC
JMFF025M18+ TCGTGATGTGAAATTCTCTGAGGCAATGAGCTCTAAGCTTCTAAATTGACGATCTTTCTC
JMFF035D06+ TCGTGATGTGAAATTCTCTGAGGCAATGAGCTCTAAGCTTCTAAATTGACGATCTTTCTC
JMFF036E11+ TCGTGATGTGAAATTCTCTGAGGCAATGAGCTCTAAGCTTCTAAATTGACGATCTTTCTC
____________________________________________________________
consensus TCGTGATGTGAAATTCTCTGAGGCAATGAGCTCTAAGCTTCTAAATTGACGATCTTTCTC
. : . : . : . : . : . :
JMFF039E06+ TTTGTTGATAATAGACCGGACTTCAGGATCAGCTTCGCTTAAATCATAGTCCAGGAAGCT
JMFF043C23+ TTTGTTGATAATAGACCGGACTTCAGGATCAGCTTCGCTTAAATCATAGTCCAGGAAGCT
JMFF025M18+ TTTGTTGATAATAGACCGGACTTCAGGATCAGCTTCGCTTAAATCATAGTCCAGGAAGCT
JMFF035D06+ TTTGTTGATAATAGACCGGACTTCAGGATCAGCTTCGCTTAAATCATAGTCCAGGAAGCT
JMFF036E11+ TTTGTTGATAATAGACCGGACTTCAGGATCAGCTTCGCTTAAATCATAGTCCAGGAAGCT
____________________________________________________________
consensus TTTGTTGATAATAGACCGGACTTCAGGATCAGCTTCGCTTAAATCATAGTCCAGGAAGCT
. : . : . : . : . : . :
JMFF039E06+ GCTACCAGCACCTCCAATTTCCTGCACTGAAATGGAAGAGCTCGACCTCCCAGTGGCCAA
JMFF043C23+ GCTACCAGCACCTCCAATTTCCTGCACTGAAATGGAAGAGCTCGACCTCCCAGTGGCCAA
JMFF025M18+ GCTACCAGCACCTCCAATTTCCTGCACTGAAATGGAAGAGCTCGACCTCCCAGTGGCCAA
JMFF035D06+ GCTACCAGCACCTCCAATTTCCTGCACTGAAATGGAAGAGCTCGACCTCCCAGTGGCCAA
JMSF001L23+ CTGCACTGAAATGGAAGAGCTCGACCTCCCAGTGGCCAA
JMFF036E11+ GCTACCAGCACCTCCAATTTCCTGCACTGAAATGGAAGAGCTCGACCTCCCAGTGGCCAA
____________________________________________________________
consensus GCTACCAGCACCTCCAATTTCCTGCACTGAAATGGAAGAGCTCGACCTCCCAGTGGCCAA
. : . : . : . : . : . :
JMFF039E06+ ACTTCCTTCAAGTTGGGTCGCTCTACAGGCCCGCACAGAAAAAACCCTAACTCTATCAGG
JMFF043C23+ ACTTCCTTCAAGTTGGGTCGCTCTACAGGCCCGCACAGAAAAAACCCTAACTCTATCAGG
JMFF025M18+ ACTTCCTTCAAGTTGGGTCGCTCTACAGGCCCGCACAGAAAAAACCCTAACTCTATCAGG
JMFF035D06+ ACTTCCTTCAAGTTGGGTCGCTCTACAGGCCCGCACAGAAAAAACCCTAACTCTATCAGG
JMFF007O22+ CGCACAGAAAAAACCNTAACTNTATCAGG
JMSF001L23+ ACTTCCTTCAAGTTGGGTCGCTCTACAGGCCCGCACAGAAAAAACCCTAACTCTATCAGG
JMFF036E11+ ACTTCCTTCAAGTTGGGTCGCTCTACAGGCCCGCACAGAAAAAACCCTAACTCTATCAGG
____________________________________________________________
consensus ACTTCCTTCAAGTTGGGTCGCTCTACAGGCCCGCACAGAAAAAACCCTAACTCTATCAGG
. : . : . : . : . : . :
JMFF039E06+ ATTCAAACACATTCCAGAGCCTTTCAGAGGAAAAGCAGACCC-TTTTTCGAAACAGGTTG
JMFF043C23+ ATTCAAACACATTCCAGAGCCTTTCAGAGGAAAAGCAGACCCTTTTTTCGAAACAGGTTG
JMFF025M18+ ATTCAAACACATTCCAGAGCCTTTCAGAGGAAAAGCAGACCC-TTTTTCGAAACAGGTTG
JMFF035D06+ ATTCAAACACATTCCAGAGCCTTTCAGAGGAAAAGCAGACCCTTTTTTCGAAACAGGTTG
JMFF007O22+ ATTCAAACACATTCCAGAGCCTTTCAGAGGAAAAGCAGACCCTTTTTTCGAAACAGGTTG
JMSF001L23+ ATTCAAACACATTCCAGAGCCTTTCAGAGGAAAAGCAGACCCTTTTTTCGAAACAGGTTG
JMFF036E11+ ATTCAAACACATTCCAGAGCCTTTCAGAGGAAAAGCAGACCCTTTTTTCGAAACAGGTTG
____________________________________________________________
consensus ATTCAAACACATTCCAGAGCCTTTCAGAGGAAAAGCAGACCCTTTTTTCGAAACAGGTTG
. : . : . : . : . : . :
JMFF039E06+ CTGAACAGAACCCATAACCGCGGCGCCACAGCAAGCTTTCATATTGCCTTAATGATACAG
JMFF043C23+ CTGAACAGAACCCATAACCGCGGCGCCACAGCAAGCTTTCATATTGCCTTAATGATACAG
JMFF025M18+ CTGAACAGAACCCATAACCGCGGCGCCACAGCAAGCTTTCATATTGCCTTAATGATACAG
JMFF035D06+ CTGAACAGAACCCATAACCGCGGCGCCACAGCAAGCTTTCATATTGCCTTAATGATACAG
JMFF007O22+ NTGAACAGAACCCATAACCGCGGCGCCTCAGCAAGCTTTCATATTGCCTTAATGATACAG
JMSF001L23+ CTGAACAGAACCCATAACCGCGGCGCCACAGCAAGCTTTCATATTGCCTTAATGATACAG
JMFF036E11+ CTGAACAGAACCCATAACCGCGGCGCCACAGCAAGCTTTCATATTGCCTTAATGATACAG
____________________________________________________________
consensus CTGAACAGAACCCATAACCGCGGCGCCACAGCAAGCTTTCATATTGCCTTAATGATACAG
. : . : . : . : . : . :
JMFF039E06+ CAACCAATAACTCCCCGGTGAGAGTTTGAGGGGTTTTGCTTTGCTTTCCAGTACTACTGT
JMFF043C23+ CAACCAATAACTCCCCGGTGAGAGTTTGAGGGGTTTTGCTTTGCTTTCCAGTACTACTGT
JMFF025M18+ CAACCAATAACTCCCCGGTGAGAGTTTGAGGGGTTTTGCTTTGCTTTCCAGTACTACTGT
JMFF035D06+ CAACCAATAACTCCCCGGTGAGAGTTTGAGGGGTTTTGCTTTGCTTTCCAGTACTACTGT
JMFF007O22+ CAACCAATAACTCCCCGGTGAGAGTTTGAGGGGTTTTGCTNTGCTTTCCAGTA
JMSF001L23+ CAACCAATAACTCCCCGGTGAGAGTTTGAGGGGTTTTGCTTTGCTTTCCAGTACTAC
JMFF036E11+ CAACCAATAACTCCCCGGTGAGAGTTTGAGGGGTTTTGCTTTGCTTTCCAGTACTACTGT
____________________________________________________________
consensus CAACCAATAACTCCCCGGTGAGAGTTTGAGGGGTTTTGCTTTGCTTTCCAGTACTACTGT