| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034J11 | Sequence | 175 | 003223 (8) | 725 | 003223 (8) | ref|XP_009778698.1| | 2e-74 | PREDICTED: syntaxin-71-like [Nicotiana sylvestris] | |||
| JMSF015B18 | Sequence | 245 | 003223 (8) | gb|KDP29099.1| | 5e-19 | hypothetical protein JCGZ_16488 [Jatropha curcas] | 775 | 003223 (8) | ref|XP_009778698.1| | 1e-95 | PREDICTED: syntaxin-71-like [Nicotiana sylvestris] |
| JMSF045L08 | Sequence | 728 | 003223 (8) | ref|XP_004249493.1| | 1e-129 | PREDICTED: syntaxin-71-like [Solanum lycopersicum] | 649 | 003223 (8) | ref|XP_009630438.1| | 1e-67 | PREDICTED: syntaxin-71-like [Nicotiana tomentosiformis] |
| JMSF046L08 | Sequence | 660 | 003223 (8) | ref|XP_004249493.1| | 5e-115 | PREDICTED: syntaxin-71-like [Solanum lycopersicum] | 631 | 003223 (8) | ref|XP_009630438.1| | 1e-64 | PREDICTED: syntaxin-71-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF034J11- TGAAGTNNNTCATTATAATACACAATAAGACTCAGAAAGCCAAGCA
rJMSF046L08- AGCA
rJMSF045L08- AGCA
rJMSF015B18- AGCA
____________________________________________________________
consensus TGAAGTNNNTCATTATAATACACAATAAGACTCAGAAAGCCAAGCA
. : . : . : . : . : . :
rJMFF034J11- GTTAGAGCACTTACAAAGGATTAAATGTAAGTATATAGAATGTCAATACACATGCTGCAG
rJMSF046L08- GTTAGAGCACTTACAAAGGATTAAATGTAAGTATATAGAATGTCAATACACATGCTGCAG
rJMSF045L08- GTTAGAGCACTTACAAAGGATTAAATGTAAGTATATAGAATGTCAATACACATGCTGCAG
rJMSF015B18- GTTAGAGCACTTACAAAGGATTAAATGTAAGTATATAGAATGTCAATACACATGCTGCAG
____________________________________________________________
consensus GTTAGAGCACTTACAAAGGATTAAATGTAAGTATATAGAATGTCAATACACATGCTGCAG
. : . : . : . : . : . :
rJMFF034J11- TTGAACCGTCCTTGGGAAAAAAACAGAAAAAGGGGAATCGCAATCCAAGTGTGAGCAGAA
rJMSF046L08- TTGAACCGTCCTTGGGAAAAAAACAGAAAAAGGGGAATCGCAATCCAAGTGTGAGCAGAA
rJMSF045L08- TTGAACCGTCCTTGGGAAAAAAACAGAAAAAGGGGAATCGCAATCCAAGTGTGAGCAGAA
rJMSF015B18- TTGAACCGTCCTTGGGAAAAAAACAGAAAAAGGGGAATCGCAATCCAAGTGTGAGCAGAA
____________________________________________________________
consensus TTGAACCGTCCTTGGGAAAAAAACAGAAAAAGGGGAATCGCAATCCAAGTGTGAGCAGAA
. : . : . : . : . : . :
rJMFF034J11- AATATGGATATGACTTCTATTTAGAGAGATGCTGCAAGATTTCAAAACACCAACCAGAAG
rJMSF046L08- AATATGGATATGACTTCTATTTAGAGAGATGCTGCAAGATTTCAAAACACCAACCAGAAG
rJMSF045L08- AATATGGATATGACTTCTATTTAGAGAGATGCTGCAAGATTTCAAAACACCAACCAGAAG
rJMSF015B18- AATATGGATATGACTTCTATTTAGAGAGATGCTGCAAGATTTCAAAACACCAACCAGAAG
____________________________________________________________
consensus AATATGGATATGACTTCTATTTAGAGAGATGCTGCAAGATTTCAAAACACCAACCAGAAG
. : . : . : . : . : . :
rJMFF034J11- CCAACATAATAAACGATTCGATAGCCTTCACAGCAGGCTTTTACTTCTTTAGGACATTGT
rJMSF046L08- CCAACATAATAAACGATTCGATAGCCTTCACAGCAGGCTTTTACTTCTTTAGGACATTGT
rJMSF045L08- CCAACATAATAAACGATTCGATAGCCTTCACAGCAGGCTTTTACTTCTTTAGGACATTGT
rJMSF015B18- CCAACATAATAAACGATTCGATAGCCTTCACAGCAGGCTTTTACTTCTTTAGGACATTGT
____________________________________________________________
consensus CCAACATAATAAACGATTCGATAGCCTTCACAGCAGGCTTTTACTTCTTTAGGACATTGT
. : . : . : . : . : . :
rJMFF034J11- ACAAGTAGGCTGCTATTCCAAGTATTATGCACAGCAAAATGATGTCAATACAGAAGTTCC
rJMSF046L08- ACAAGTAGGCTGCTATTCCAAGTATTATGCACAGCAAAATGATGTCAATACAGAAGTTCC
rJMSF045L08- ACAAGTAGGCTGCTATTCCAAGTATTATGCACAGCAAAATGATGTCAATACAGAAGTTCC
rJMSF015B18- ACAAGTAGGCTGCTATTCCAAGTATTATGCACAGCAAAATGATGTCAATACAGAAGTTCC
____________________________________________________________
consensus ACAAGTAGGCTGCTATTCCAAGTATTATGCACAGCAAAATGATGTCAATACAGAAGTTCC
. : . : . : . : . : . :
rJMFF034J11- GACTAGATCGTAGCTGGGTAACTGTATCCTTAAGCCTGACATTGGTGTTCTTAAGGTCAG
rJMSF046L08- GACTAGATCGTAGCTGGGTAACTGTATCCTTAAGCCTGACATTGGTGTTCTTAAGGTCAG
rJMSF045L08- GACTAGATCGTAGCTGGGTAACTGTATCCTTAAGCCTGACATTGGTGTTCTTAAGGTCAG
rJMSF015B18- GACTAGATCGTAGCTGGGTAACTGTATCCTTAAGCCTGACATTGGTGTTCTTAAGGTCAG
____________________________________________________________
consensus GACTAGATCGTAGCTGGGTAACTGTATCCTTAAGCCTGACATTGGTGTTCTTAAGGTCAG
. : . : . : . : . : . :
rJMFF034J11- ATGTGGCCTTGTCAACCTTGGTGTCAATTTCATCCATCAGAGGGACTTGNCTATCCAATT
rJMSF046L08- ATGTGGCCTTGTCAACCTTGGTGTCAATTTCATCCATCAGAGGGACTTGTCTATCCAATT
rJMSF045L08- ATGTGGCCTTGTCAACCTTGGTGTCAATTTCATCCATCAGAGGGACTTGTCTATCCAATT
rJMSF015B18- ATGTGGCCTTGTCAACCTTGGTGTCAATTTCATCCATCAGAGGGACTTGTCTATCCAATT
JMSF045L08+ TGTCAATTTCATCCATCAGAGGGACTTGTCTATCCAATT
____________________________________________________________
consensus ATGTGGCCTTGTCAACCTTGGTGTCAATTTCATCCATCAGAGGGACTTGTCTATCCAATT
. : . : . : . : . : . :
rJMFF034J11- CCTCATTCATGTTGTGGGCCATGTCTTTCAAGGTATCCAAACCTTCTGATATAACTGCCA
rJMSF046L08- CCTCATTCATGTTGTGGGCCATGTCTTTCAAGGTATCCAAACCTTCTGATATAACTGCCA
rJMSF045L08- CCTCATTCATGTTGTGGGCCATGTCTTTCAAGGTATCCAAACCTTCTGATATAACTGCCA
rJMSF015B18- CCTCATTCATGTTGTGGGCCATGTCTTTCAAGGTATCCAAACCTTCTGATATAACTGCCA
JMSF046L08+ AAGGTATCCAAACCTTCTGATATAACTGCCA
JMSF045L08+ CCTCATTCATGTTGTGGGCCATGTCTTTCAAGGTATCCAAACCTTNTGATATAACTGCCA
____________________________________________________________
consensus CCTCATTCATGTTGTGGGCCATGTCTTTCAAGGTATCCAAACCTTCTGATATAACTGCCA
. : . : . : . : . : . :
rJMFF034J11- GACCTTGGTCCTGTCTCATTTTTCGCATTTCATACTCTTGCCTGAAATTACTAGACTCTT
rJMSF046L08- GACCTTGGTCCTGTCTCATTTTTCGCATTTCATACTCTTGCCTGAAATTACTAGACTCTT
rJMSF045L08- GACCTTGGTCCTGTCTCATTTTTCGCATTTCATACTCTTGCCTGAAATTACTAGACTCTT
rJMSF015B18- GACCTTGGTCCTGTCTCATTTTTCGCATTTCATACTCTTGCCTGAAATTACTAGACTCTT
JMSF046L08+ GACCTTGGTCCTGTCTCATTTTTCGCATTTCATACTCTTGCCTGAAATTACTAGACTCTT
JMSF045L08+ GACCTTGGTCCTGTCTCATTTTTCGCATTTCATACTCTTGCCTGAAATTACTAGACTCTT
____________________________________________________________
consensus GACCTTGGTCCTGTCTCATTTTTCGCATTTCATACTCTTGCCTGAAATTACTAGACTCTT
. : . : . : . : . : . :
rJMFF034J11- CAGTTTGCTGAAAAAATTCATCATCAAACCGGCCATCTGAATCAAATTTAATTTCTGCCC
rJMSF046L08- CAGTTTGCTGAAAAAATTCATCATCAAACCGGCCATCTGAATCAAATTTAATTTCTGCCC
rJMSF045L08- CAGTTTGCTGAAAAAATTCATCATCAAACCGGCCATCTGAATCAAATTTAATTTCTGCCC
rJMSF015B18- CAGTTTGCTGAAAAAATTCATCATCAAACCGGCCATCTGAATCAAATTTAATTTCTGCCC
JMSF046L08+ CAGTTTGCTGAAAAAATTCATCATCAAACCGGCCATCTGAATCAAATTTAATTTCTGCCC
JMSF045L08+ CAGTTTGCTGAAAAAATTCATCATCAAACCGGCCATCTGAATCAAATTTAATTTCTGCCC
____________________________________________________________
consensus CAGTTTGCTGAAAAAATTCATCATCAAACCGGCCATCTGAATCAAATTTAATTTCTGCCC
. : . : . : . : . : . :
rJMFF034J11- GAGAACCTGAAGTTCCCCACCCTCCAGATTGTTTAGGTGGAGCANAGGAACCATCTGGGA
rJMSF046L08- GAGAACCTGAAGTTCCCCACCCTCC
rJMSF045L08- GAGAACCTGAAGTTCCCCACCCTCCAGATTGTTTAGG
rJMSF015B18- GAGAACCTGAAGTTCCCCACCCTCCAGATTGTTTAGGTGGAGCAGAGGAACCATCTGGGA
JMSF046L08+ GAGAACCTGAAGTTCCCCACCCTCCAGATTGTTTAGGTGGAGCAGAGGAACCATCTGGGA
JMSF045L08+ GAGAACCTGAAGTTCCCCACCCTCCAGATTGTTTAGGTGGAGCAGAGGAACCATCTGGGA
____________________________________________________________
consensus GAGAACCTGAAGTTCCCCACCCTCCAGATTGTTTAGGTGGAGCAGAGGAACCATCTGGGA
. : . : . : . : . : . :
rJMFF034J11- TGGAATTAATCCTATCA
rJMSF015B18- TGGAATTAATCCTATCAGGCAATGCAAGGACCAAATCATTACGGGCAGCAAGTTCCTCTC
JMSF046L08+ TGGAATTAATCCTATCAGGCAATGCAAGGACCAAATCATTACGGGCAGCAAGTTCCTCTC
JMSF045L08+ TGGAATTAATCCTATCAGGCAATGCAAGGACCAAATCATTACGGGCAGCAAGTTCCTCTC
____________________________________________________________
consensus TGGAATTAATCCTATCAGGCAATGCAAGGACCAAATCATTACGGGCAGCAAGTTCCTCTC
. : . : . : . : . : . :
rJMSF015B18- CTGAAAGCCCTTTAACCTTCTTTACAGCCAATCTCTG
JMSF046L08+ CTGAAAGCCCTTTAACCTTCTTTACAGCCAATCTCTGCAATTTAGGGACTTCCTCAAGCA
JMSF045L08+ CTGAAAGCCCTTTAACCTTCTTTACAGCCAATCTCTGCAATTTAGGGACTTCCTCAAGCA
____________________________________________________________
consensus CTGAAAGCCCTTTAACCTTCTTTACAGCCAATCTCTGCAATTTAGGGACTTCCTCAAGCA
. : . : . : . : . : . :
JMSF046L08+ ATTTCGCCTTCGTTCTCCTAATTTCCGCATTGATCGCTACAACAGAAGCTCTACTCTTCT
JMSF045L08+ ATTTCGCCTTCGTTCTCCTAATTTCCGCATTGATCGCTACAACAGAAGCTCTACTCTTCT
____________________________________________________________
consensus ATTTCGCCTTCGTTCTCCTAATTTCCGCATTGATCGCTACAACAGAAGCTCTACTCTTCT
. : . : . : . : . : . :
JMSF046L08+ CCGTCCCAGCATTCTCCGCTTTCTGAAGACAGGTCTCGATATCACTCTCGATATCGGCAT
JMSF045L08+ CCGTCCCAGCATTCTCCGCTTTCTGAAGACAGGTCTCGATATCACTCTCGATATCGGCAT
JMSF015B18+ TGAAGACAGGTCTCGATATCACTCTCGATATCGGCAT
____________________________________________________________
consensus CCGTCCCAGCATTCTCCGCTTTCTGAAGACAGGTCTCGATATCACTCTCGATATCGGCAT
. : . : . : . : . : . :
JMSF046L08+ AGAGGCGAGCAAATGCGTCGTCGCCGGAGATGTTGGAGTCCTTTTGCTTCTCGACGTCGT
JMSF045L08+ AGAGGCGAGCAAATGCGTCGTCGCCGGAGATGTTGGAGTCCTTTTGCTTCTCGACGTCGT
JMSF015B18+ AGAGGCGAGCAAATGCGTCGTCGCCGGAGATGTTGGAGTCCTTTTGCTTCTCGACGTCGT
____________________________________________________________
consensus AGAGGCGAGCAAATGCGTCGTCGCCGGAGATGTTGGAGTCCTTTTGCTTCTCGACGTCGT
. : . : . : . : . : . :
JMSF046L08+ ACTTGTCGTACTTCTTACAGATCGCGTCGACGCGGGTGAGAAGGTCGATCACAGTCATGT
JMSF045L08+ ACTTGTCGTACTTCTTACAGATCGCGTCGACGCGGGTGAGAAGGTCGATCACAGTCATGT
JMSF015B18+ ACTTGTCGTACTTCTTACAGATCGCGTCGACGCGGGTGAGAAGGTCGAT--CAGTCATGT
JMFF034J11+ TCGTACTTCTTACAGATCGCGTNGACGCGGGTGAGAAGGTCGATCACAGTCATGT
____________________________________________________________
consensus ACTTGTCGTACTTCTTACAGATCGCGTCGACGCGGGTGAGAAGGTCGATCACAGTCATGT
. : . : . : . : . : . :
JMSF046L08+ TTGCCCCTCAGTTCTCGGATCGAATCCCTTTCGCTCTCAGATCAGGAAAGGCCGCGGAGG
JMSF045L08+ TTGCCCCTCAGTTCTCGGATCGAATCCCTTTCGCTCTCAGATCAGGAAAGGCCGCGGAGG
JMSF015B18+ TTGCCCCTCAGTTCTCGGATCGAATCCCTTTCGCTCTCAGATCAGGAAAGGCCGCGGAGG
JMFF034J11+ TTGCCCCTCAGTTCTCGGATNGAATCCCTTTCGCTCTCAGATCAGGAAAGGCCGCGGAGG
____________________________________________________________
consensus TTGCCCCTCAGTTCTCGGATCGAATCCCTTTCGCTCTCAGATCAGGAAAGGCCGCGGAGG
. : . : . : . : . : . :
JMSF046L08+ TGCATAGACGGAGTTTTATCTACAGCGCC
JMSF045L08+ TGCATAGACGGAGTTTTATCTACAGCGCC
JMSF015B18+ TGCATAGACGGAGTTTTATCTACAGCGCC
JMFF034J11+ TGCATAGACGGAGTTTTATNTACAGCGCCGGCGATATTTGGAAAGGAAAACGGAGTTTTT
____________________________________________________________
consensus TGCATAGACGGAGTTTTATCTACAGCGCCGGCGATATTTGGAAAGGAAAACGGAGTTTTT