Contig 003221:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033P01Sequence488003221 (7)ref|XP_009762782.1|2e-51PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [755004259 (4)ref|XP_010314247.1|7e-60PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [
JMFS006F07Sequence554003221 (7)ref|XP_009762781.1|7e-66PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [
JMFS042A09Sequence608003221 (7)ref|XP_009762781.1|1e-87PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [
JMFS049H07Sequence606003221 (7)ref|XP_009762781.1|6e-78PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [
JMFS092B03Sequence616003221 (7)ref|XP_009762781.1|1e-85PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [
JMSF018I11Sequence489003221 (7)ref|XP_009762781.1|2e-52PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [744004259 (4)ref|XP_006349272.1|5e-54PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like [Solanu
JMSF021P07Sequence695003221 (7)ref|XP_009762781.1|5e-92PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [690004259 (4)ref|XP_002527822.1|4e-44Squamous cell carcinoma antigen recognized by T-cells, putative [Ricinus commun

Alignment

This contig is upended


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JMFS042A09+                                                              GCTTGTTCA
JMSF021P07+                               GTGATCAGTTCCATCAATTGTGATGAGAATGGCTTGTTCA
                      ____________________________________________________________
consensus                                 GTGATCAGTTCCATCAATTGTGATGAGAATGGCTTGTTCA
 
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JMFS092B03+             GTCCCTGTATAATTCCCATATCCGGCCACCCTCAGCAACATGCAAACCAGCGGCAGTA
JMFS042A09+           AAGTCCCTGTATAATTCCCATATCCGGCCACCTTCAGCAACATGCAAACCAGCGGCAGTA
JMFS049H07+                                             CAGCAACATGCAAACCAGCGGCAGTA
JMSF021P07+           AAGTCCCTGTATAATTCCCATATCCGGCCACCTTCAGCAACATGCAAACCAGCGGCAGTA
                      ____________________________________________________________
consensus             AAGTCCCTGTATAATTCCCATATCCGGCCACCTTCAGCAACATGCAAACCAGCGGCAGTA
 
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JMFS092B03+           AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
JMFS042A09+           AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
JMFS049H07+           AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
JMFS006F07+                                         GATATACCATCTATAGAACATGAACTAACT
JMSF021P07+           AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
                      ____________________________________________________________
consensus             AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
 
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JMFS092B03+           GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMFS042A09+           GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMFS049H07+           GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMFS006F07+           GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMSF018I11+                                                       AACCACAGACAGATAA
JMSF021P07+           GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMFF033P01+                                                               ACAGATAA
                      ____________________________________________________________
consensus             GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
 
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JMFS092B03+           TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMFS042A09+           TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMFS049H07+           TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMFS006F07+           TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMSF018I11+           TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMSF021P07+           TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMFF033P01+           TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
                      ____________________________________________________________
consensus             TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
 
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JMFS092B03+           AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMFS042A09+           AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMFS049H07+           AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMFS006F07+           AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMSF018I11+           AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMSF021P07+           AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMFF033P01+           AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
                      ____________________________________________________________
consensus             AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
 
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JMFS092B03+           CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMFS042A09+           CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMFS049H07+           CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMFS006F07+           CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMSF018I11+           CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMSF021P07+           CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMFF033P01+           CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
                      ____________________________________________________________
consensus             CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
 
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JMFS092B03+           ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMFS042A09+           ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMFS049H07+           ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMFS006F07+           ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMSF018I11+           ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMSF021P07+           ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMFF033P01+           ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
                      ____________________________________________________________
consensus             ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
 
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JMFS092B03+           TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMFS042A09+           TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMFS049H07+           TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMFS006F07+           TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMSF018I11+           TGAATTTCGAGATTCTGTTNAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMSF021P07+           TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMFF033P01+           TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
                      ____________________________________________________________
consensus             TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
 
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JMFS092B03+           CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMFS042A09+           CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMFS049H07+           CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMFS006F07+           CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMSF018I11+           CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMSF021P07+           CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMFF033P01+           CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
                      ____________________________________________________________
consensus             CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
 
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JMFS092B03+           GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMFS042A09+           GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTC 
JMFS049H07+           GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMFS006F07+           GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMSF018I11+           GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMSF021P07+           GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMFF033P01+           GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
                      ____________________________________________________________
consensus             GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
 
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JMFS092B03+           GCCATGGTTTTTGGGGGT                                          
JMFS049H07+           GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAG                    
JMFS006F07+           GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTA                
JMSF018I11+           GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTACAGACAC         
JMSF021P07+           GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTACAGACAC         
JMFF033P01+           GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTACAGACACACTGCAGAG
                      ____________________________________________________________
consensus             GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTACAGACACACTGCAGAG