Contig 003186:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002E11Sequence282003186 (10)742003186 (10)ref|XP_009778654.1|5e-126PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris
JMFF023C12Sequence455003186 (10)ref|XP_006364593.1|3e-15PREDICTED: malate dehydrogenase, chloroplastic-like [Solanum tuberosum]
JMFF027D21Sequence618003186 (10)ref|XP_006364593.1|4e-49PREDICTED: malate dehydrogenase, chloroplastic-like [Solanum tuberosum]741003186 (10)ref|XP_009778654.1|1e-127PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris
JMFN039B19Sequence622003186 (10)ref|XP_009778654.1|2e-138PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris
JMSF031I15Sequence664003186 (10)ref|XP_006364593.1|4e-90PREDICTED: malate dehydrogenase, chloroplastic-like [Solanum tuberosum]769003186 (10)ref|XP_009778654.1|1e-123PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris
JMSF042E23Sequence778003186 (10)ref|XP_006364593.1|8e-119PREDICTED: malate dehydrogenase, chloroplastic-like [Solanum tuberosum]748003186 (10)ref|XP_009778654.1|2e-114PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF031I15- ATAAGAGTGCCAAAACAGGTTATATGAGGAGGATGTA
rJMSF042E23- ATGAGGAGGATGTA
                      ____________________________________________________________
consensus ATAAGAGTGCCAAAACAGGTTATATGAGGAGGATGTA
 
. : . : . : . : . : . :
rJMSF031I15- TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
rJMSF042E23- TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
rJMFF002E11- TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
rJMFF027D21- TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
                      ____________________________________________________________
consensus TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
 
. : . : . : . : . : . :
rJMSF031I15- GCGTTCATCTTCTTCTCCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
rJMSF042E23- GCGTTCATCTTCTTCTCCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
rJMFF002E11- GCGTTCATCTTCTTCTCCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
rJMFF027D21- GCGTTCATCTTCTTC-CCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
                      ____________________________________________________________
consensus GCGTTCATCTTCTTCTCCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
 
. : . : . : . : . : . :
rJMSF031I15- TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
rJMSF042E23- TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
rJMFF002E11- TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
rJMFF027D21- TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
JMFN039B19+ A
                      ____________________________________________________________
consensus TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
 
. : . : . : . : . : . :
rJMSF031I15- AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
rJMSF042E23- AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
rJMFF002E11- AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
rJMFF027D21- AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
JMFN039B19+ AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
                      ____________________________________________________________
consensus AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
 
. : . : . : . : . : . :
rJMSF031I15- GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
rJMSF042E23- GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
rJMFF002E11- GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
rJMFF027D21- GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
JMFN039B19+ GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
                      ____________________________________________________________
consensus GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
 
. : . : . : . : . : . :
rJMSF031I15- CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
rJMSF042E23- CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
rJMFF002E11- CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
rJMFF027D21- CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
JMFN039B19+ CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
                      ____________________________________________________________
consensus CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
 
. : . : . : . : . : . :
rJMSF031I15- ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
rJMSF042E23- ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
rJMFF002E11- ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
rJMFF027D21- ACTCGTACACATCACTGTCTCCGTCTAAAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
JMFN039B19+ ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
                      ____________________________________________________________
consensus ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
 
. : . : . : . : . : . :
rJMSF031I15- CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
rJMSF042E23- CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
rJMFF002E11- CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
rJMFF027D21- CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
JMFN039B19+ CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
                      ____________________________________________________________
consensus CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
 
. : . : . : . : . : . :
rJMSF031I15- TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
rJMSF042E23- TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
rJMFF002E11- TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
rJMFF027D21- TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
JMFN039B19+ TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
                      ____________________________________________________________
consensus TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
 
. : . : . : . : . : . :
rJMSF031I15- ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
rJMSF042E23- ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
rJMFF002E11- ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
rJMFF027D21- ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
JMFN039B19+ ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
                      ____________________________________________________________
consensus ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
 
. : . : . : . : . : . :
rJMSF031I15- GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
rJMSF042E23- GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
rJMFF002E11- GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
rJMFF027D21- GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
JMFN039B19+ GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
                      ____________________________________________________________
consensus GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
 
. : . : . : . : . : . :
rJMSF031I15- CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
rJMSF042E23- CGACATCAAGGGTGGTAACACCAAAAGAGTTTCTTGGGAATCATACACTCCCTTTTGCTT
rJMFF002E11- CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
rJMFF027D21- CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
JMFN039B19+ CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
                      ____________________________________________________________
consensus CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
 
. : . : . : . : . : . :
rJMSF031I15- CANAACTTCTGCAG
rJMSF042E23- CAGANCTTCTGCAG
rJMFF002E11- CAGAACTTCTGCAG
rJMFF027D21- CAGAACTTCTGCAGCAAT
JMFN039B19+ CAGAACTTCTGCAGCAATTGGGACAGTAGAGTTGACAGGATTACTGATAATGTGGATGAA
JMSF042E23+ TGCAGCAATTGGGACAGTAGAGTTGACAGGATTACTGATAATGTGGATGAA
                      ____________________________________________________________
consensus CAGAACTTCTGCAGCAATTGGGACAGTAGAGTTGACAGGATTACTGATAATGTGGATGAA
 
. : . : . : . : . : . :
JMFN039B19+ GGCATCGGGGCAGTTATCAGCAA
JMSF042E23+ GGCATCGGGGCAGTTATCAGCAACAGCCTCAACCAAGTTCTTTACAATGTTGGCGTTTAT
                      ____________________________________________________________
consensus GGCATCGGGGCAGTTATCAGCAACAGCCTCAACCAAGTTCTTTACAATGTTGGCGTTTAT
 
. : . : . : . : . : . :
JMSF042E23+ ATTGAACAGGTCATCACGTGTCATGCCTGGCTTCCTTGGAACACCAGCAGGTATGACAAC
JMSF031I15+ TGAACAGGTCATCACGTGTCATGCCTGGCTTCCTTGGAACACCAGCAGGTATGACAAC
                      ____________________________________________________________
consensus ATTGAACAGGTCATCACGTGTCATGCCTGGCTTCCTTGGAACACCAGCAGGTATGACAAC
 
. : . : . : . : . : . :
JMSF042E23+ CACATTGACATCTTTCAAACAGTTGGCTAATTCAGAAGCTCCAGTGAAATCTAACACCTG
JMSF031I15+ CACATTGACATCTTTCAAACAGTTGGCTAATTCAGAAGCTCCAGTGAAATCTAACACCTG
                      ____________________________________________________________
consensus CACATTGACATCTTTCAAACAGTTGGCTAATTCAGAAGCTCCAGTGAAATCTAACACCTG
 
. : . : . : . : . : . :
JMSF042E23+ GGAGGGAGTGTTGCAGTGGCTAAGATCTGCTGCAACTCCCTTAACATTCGCTATATCATA
JMSF031I15+ GGAGGGAGTGTTGCAGTGGCTAAGATCTGCTGCAACTCCCTTAACATTCGCTATATCATA
JMFF027D21+ AACATTCGCTATATCATA
                      ____________________________________________________________
consensus GGAGGGAGTGTTGCAGTGGCTAAGATCTGCTGCAACTCCCTTAACATTCGCTATATCATA
 
. : . : . : . : . : . :
JMSF042E23+ AAGATGCAAATCTGAAACAAGCGGTGACATCTTGATCAGAAGAGCTAGTGGCTGCCCTAT
JMSF031I15+ AAGATGCAAATCTGAAACAAGCGGTGACATCTTGATCAGAAGAGCTAGTGGCTGCCCTAT
JMFF027D21+ AAGATGCAAATCTGAAACAAGCGGTGACATCTTGATCAGAAGAGCTAGTGGCTGCCCTAT
                      ____________________________________________________________
consensus AAGATGCAAATCTGAAACAAGCGGTGACATCTTGATCAGAAGAGCTAGTGGCTGCCCTAT
 
. : . : . : . : . : . :
JMSF042E23+ GCCTCCACCAGCCCCAAGAACAGCAACTTTGTATGATGCCTGAGGTTGAACACAGTTCAG
JMSF031I15+ GCCTCCACCAGCCCCAAGAACAGCAACTTTGTATGATGCCTGAGGTTGAACACAGTTCAG
JMFF027D21+ GCCTCCACCAGCCCCAAGAACAGCAACTTTGTATGATGCCTGAGGTTGAACACAGTTCAG
                      ____________________________________________________________
consensus GCCTCCACCAGCCCCAAGAACAGCAACTTTGTATGATGCCTGAGGTTGAACACAGTTCAG
 
. : . : . : . : . : . :
JMSF042E23+ TGATCTATGGCTTTCCTTTTGGGCCCTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
JMSF031I15+ TGATCTATGGCTTTCCTTTTGGGCCCTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
JMFF023C12+ CTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
JMFF027D21+ TGATCTATGGCTTTCCTTTTGGGCCCTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
                      ____________________________________________________________
consensus TGATCTATGGCTTTCCTTTTGGGCCCTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
 
. : . : . : . : . : . :
JMSF042E23+ TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
JMSF031I15+ TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
JMFF023C12+ TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
JMFF027D21+ TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
                      ____________________________________________________________
consensus TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
 
. : . : . : . : . : . :
JMSF042E23+ ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
JMSF031I15+ ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
JMFF023C12+ ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
JMFF002E11+ GTTCCCAAGGCAACCCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
JMFF027D21+ ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
                      ____________________________________________________________
consensus ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
 
. : . : . : . : . : . :
JMSF042E23+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
JMSF031I15+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
JMFF023C12+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
JMFF002E11+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
JMFF027D21+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
                      ____________________________________________________________
consensus GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
 
. : . : . : . : . : . :
JMSF042E23+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
JMSF031I15+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
JMFF023C12+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
JMFF002E11+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
JMFF027D21+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
                      ____________________________________________________________
consensus TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
 
. : . : . : . : . : . :
JMSF042E23+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
JMSF031I15+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
JMFF023C12+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
JMFF002E11+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
JMFF027D21+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
                      ____________________________________________________________
consensus ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
 
. : . : . : . : . : . :
JMSF042E23+ CCCTC
JMSF031I15+ CCCTC
JMFF023C12+ CCCTCGCTCAAATCCCCTGGCGGGCGATCGGCTGTTAGGTCAAAGCGTACGGTTGGCGAA
JMFF002E11+ CCCTCGCTCAAATCCCCTGGCGGGCGATCGGCTGTTAGGTCAAAGCGT
JMFF027D21+ CCCTCGCTCAAATCCCCTGGCGGGCGATCGGCTGTTAGGTCAAAGCGTACGGTTGGCGAA
                      ____________________________________________________________
consensus CCCTCGCTCAAATCCCCTGGCGGGCGATCGGCTGTTAGGTCAAAGCGTACGGTTGGCGAA
 
. : . : . : . : . : . :
JMFF023C12+ TCTACTCTCAAGATTCTTCGACAACGAGGCGAAAGACGTGGGCCGTCAGTTTCGGTGAGA
JMFF027D21+ TCTACTCTCAAGATTCTTCGACAACGAGGCGAAAGACGTGGGCCGTCAGTTTCGGTGAGA
                      ____________________________________________________________
consensus TCTACTCTCAAGATTCTTCGACAACGAGGCGAAAGACGTGGGCCGTCAGTTTCGGTGAGA