clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005M08 | Sequence | 492 | 003179 (4) | gb|ACQ44244.1| | 3e-77 | chlorophyll synthase [Nicotiana tabacum] | 479 | 009612 (4) | ref|XP_009376426.1| | 1e-51 | PREDICTED: chlorophyll synthase, chloroplastic-like isoform X1 [Pyrus x bretsch |
JMFF005N08 | Sequence | 553 | 003179 (4) | ref|XP_009762729.1| | 1e-93 | PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana sylvestris] | 791 | 009612 (4) | ref|XP_009606938.1| | 1e-85 | PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis] |
JMFF020K13 | Sequence | 558 | 003179 (4) | ref|XP_009762729.1| | 2e-78 | PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana sylvestris] | 692 | 009612 (4) | ref|XP_009606938.1| | 6e-61 | PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis] |
JMFF025H15 | Sequence | 558 | 003179 (4) | gb|ACQ44244.1| | 2e-93 | chlorophyll synthase [Nicotiana tabacum] | 792 | 009612 (4) | ref|XP_009606938.1| | 1e-85 | PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFF005N08+ CAGATATAGCTCCA
JMFF020K13+ CAGATATAGCTCCA
JMFF025H15+ ATTCTCAGATATAGCTCCA
____________________________________________________________
consensus ATTCTCAGATATAGCTCCA
. : . : . : . : . : . :
JMFF005N08+ GAGGGAATTGGACGGTAAGGTTCATTAATAGCATCAATTTCTC-GATCATACCAGTCATT
JMFF020K13+ GAGGGAATTGGACGGTAAGGTTCATTAATAGCATCAATTTCTCGGATCATACCAGTCATT
JMFF005M08+ ATACCAGTCATT
JMFF025H15+ GAGGGAATTGGACGGTAAGGTTCATTAATAGCATCAATTTCTC-GATCATACCAGTCATT
____________________________________________________________
consensus GAGGGAATTGGACGGTAAGGTTCATTAATAGCATCAATTTCTC-GATCATACCAGTCATT
. : . : . : . : . : . :
JMFF005N08+ AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
JMFF020K13+ AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
JMFF005M08+ AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
JMFF025H15+ AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
____________________________________________________________
consensus AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
. : . : . : . : . : . :
JMFF005N08+ AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
JMFF020K13+ AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
JMFF005M08+ AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
JMFF025H15+ AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
____________________________________________________________
consensus AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
. : . : . : . : . : . :
JMFF005N08+ CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
JMFF020K13+ CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
JMFF005M08+ CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
JMFF025H15+ CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
____________________________________________________________
consensus CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
. : . : . : . : . : . :
JMFF005N08+ CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
JMFF020K13+ CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
JMFF005M08+ CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
JMFF025H15+ CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
____________________________________________________________
consensus CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
. : . : . : . : . : . :
JMFF005N08+ CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
JMFF020K13+ CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
JMFF005M08+ CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
JMFF025H15+ CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
____________________________________________________________
consensus CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
. : . : . : . : . : . :
JMFF005N08+ AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
JMFF020K13+ AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
JMFF005M08+ AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
JMFF025H15+ AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
____________________________________________________________
consensus AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
. : . : . : . : . : . :
JMFF005N08+ ATTACATTTAAAACTTGATAATCTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
JMFF020K13+ ATTACATTTAAAACTTGATAATCTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
JMFF005M08+ ATTACATTTAAAACTTGATAATNTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
JMFF025H15+ ATTACATTTAAAACTTGATAATCTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
____________________________________________________________
consensus ATTACATTTAAAACTTGATAATCTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
. : . : . : . : . : . :
JMFF005N08+ AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTTGTAGTTTTGGCTCAGTCTTGAGGAGTG
JMFF020K13+ AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTTGTAGTTTTGGCTCAGTCTTGAGGAGTG
JMFF005M08+ AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTNGTAGTTNTGGCTCAGTCTTGAGGAGTG
JMFF025H15+ AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTTGTAGTTTTGGCTCAGTCTTGAGGAGTG
____________________________________________________________
consensus AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTTGTAGTTTTGGCTCAGTCTTGAGGAGTG