Contig 003179:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005M08Sequence492003179 (4)gb|ACQ44244.1|3e-77chlorophyll synthase [Nicotiana tabacum]479009612 (4)ref|XP_009376426.1|1e-51PREDICTED: chlorophyll synthase, chloroplastic-like isoform X1 [Pyrus x bretsch
JMFF005N08Sequence553003179 (4)ref|XP_009762729.1|1e-93PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana sylvestris]791009612 (4)ref|XP_009606938.1|1e-85PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]
JMFF020K13Sequence558003179 (4)ref|XP_009762729.1|2e-78PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana sylvestris]692009612 (4)ref|XP_009606938.1|6e-61PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]
JMFF025H15Sequence558003179 (4)gb|ACQ44244.1|2e-93chlorophyll synthase [Nicotiana tabacum]792009612 (4)ref|XP_009606938.1|1e-85PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF005N08+ CAGATATAGCTCCA
JMFF020K13+ CAGATATAGCTCCA
JMFF025H15+ ATTCTCAGATATAGCTCCA
                      ____________________________________________________________
consensus ATTCTCAGATATAGCTCCA
 
. : . : . : . : . : . :
JMFF005N08+ GAGGGAATTGGACGGTAAGGTTCATTAATAGCATCAATTTCTC-GATCATACCAGTCATT
JMFF020K13+ GAGGGAATTGGACGGTAAGGTTCATTAATAGCATCAATTTCTCGGATCATACCAGTCATT
JMFF005M08+ ATACCAGTCATT
JMFF025H15+ GAGGGAATTGGACGGTAAGGTTCATTAATAGCATCAATTTCTC-GATCATACCAGTCATT
                      ____________________________________________________________
consensus GAGGGAATTGGACGGTAAGGTTCATTAATAGCATCAATTTCTC-GATCATACCAGTCATT
 
. : . : . : . : . : . :
JMFF005N08+ AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
JMFF020K13+ AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
JMFF005M08+ AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
JMFF025H15+ AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
                      ____________________________________________________________
consensus AATTGTCTGAGTGTAGCCCGTAAGGAAAGGACCAGACATTAGCATACAAACAATTGATTT
 
. : . : . : . : . : . :
JMFF005N08+ AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
JMFF020K13+ AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
JMFF005M08+ AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
JMFF025H15+ AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
                      ____________________________________________________________
consensus AGCCACATCTTCGGGAGTCCAGTGGAAGTTCCCTGAAGCAGCAGCTCCACAGACCACACC
 
. : . : . : . : . : . :
JMFF005N08+ CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
JMFF020K13+ CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
JMFF005M08+ CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
JMFF025H15+ CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
                      ____________________________________________________________
consensus CCAGACAAGGGGAGGCCAAGTAACAGGCTTTGTTAGCTGAACACGAATCTTCCATTTGTC
 
. : . : . : . : . : . :
JMFF005N08+ CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
JMFF020K13+ CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
JMFF005M08+ CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
JMFF025H15+ CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
                      ____________________________________________________________
consensus CGTTTCTTGCTTGGCTCCTTTGATACCAAGAATTTGATTAATGCTGGAACCAGAAGCCGG
 
. : . : . : . : . : . :
JMFF005N08+ CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
JMFF020K13+ CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
JMFF005M08+ CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
JMFF025H15+ CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
                      ____________________________________________________________
consensus CGGCGCCTTATCCGGTACCGTAGCTTTAACTTCACTGTCAGTCTCGGCGGCCCTCACCAC
 
. : . : . : . : . : . :
JMFF005N08+ AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
JMFF020K13+ AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
JMFF005M08+ AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
JMFF025H15+ AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
                      ____________________________________________________________
consensus AAACCTGCTCCTTGAGGGAGTCAGAGAGATAGGATATGAGAGGTGCGGAGCTCGAAGGGG
 
. : . : . : . : . : . :
JMFF005N08+ ATTACATTTAAAACTTGATAATCTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
JMFF020K13+ ATTACATTTAAAACTTGATAATCTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
JMFF005M08+ ATTACATTTAAAACTTGATAATNTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
JMFF025H15+ ATTACATTTAAAACTTGATAATCTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
                      ____________________________________________________________
consensus ATTACATTTAAAACTTGATAATCTTATGGAGGGCACAGTGTTGAGCAGAGAAGCCATTGA
 
. : . : . : . : . : . :
JMFF005N08+ AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTTGTAGTTTTGGCTCAGTCTTGAGGAGTG
JMFF020K13+ AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTTGTAGTTTTGGCTCAGTCTTGAGGAGTG
JMFF005M08+ AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTNGTAGTTNTGGCTCAGTCTTGAGGAGTG
JMFF025H15+ AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTTGTAGTTTTGGCTCAGTCTTGAGGAGTG
                      ____________________________________________________________
consensus AGGTAAGGTTATCGAGCTTAGCTAAAAAGCTTTGTAGTTTTGGCTCAGTCTTGAGGAGTG